RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZCCHC4Q9H5U6 513 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 ZNF705GA8MUZ8 300 aaPredicted RBP9.79□□□□□ -0.84
CD44-201ENST00000263398 OIP5O43482 229 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 QDPRP09417 244 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 TBPP20226 339 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 RRADP55042 308 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 IL10RAQ13651 578 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 SLC17A1Q14916 467 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 C2orf76Q3KRA6 126 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 MORN4Q8NDC4 146 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 RNF170Q96K19 258 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 FER1L6-AS2Q96M78 137 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 NEURL2Q9BR09 285 aa9.79□□□□□ -0.84
CD44-201ENST00000263398 WSB2Q9NYS7 404 aaPredicted RBP9.79□□□□□ -0.84
CD44-201ENST00000263398 PSMB6P28072 239 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 KIR2DL3P43628 341 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 HMGA2P52926 109 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 MCCD1P59942 119 aaPredicted RBP9.78□□□□□ -0.84
CD44-201ENST00000263398 SELENBP1Q13228 472 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 KCNAB1Q14722 419 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 FAM27D1Q5T7N8 215 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 KCNRGQ8N5I3 272 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 OR2AK2Q8NG84 335 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 OR4N2Q8NGD1 307 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TERB2Q8NHR7 220 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 HMGCLL1Q8TB92 370 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TSLPQ969D9 159 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 UBL7Q96S82 380 aaPredicted RBP9.78□□□□□ -0.84
CD44-201ENST00000263398 JAM3Q9BX67 310 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 SAMD10Q9BYL1 202 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 S1PR5Q9H228 398 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TAF9BQ9HBM6 251 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 PRDM7Q9NQW5 492 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 LRP5LA4QPB2 252 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TCN2P20062 427 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 HNF4GQ14541 408 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 PCK2Q16822 640 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TMEM196Q5HYL7 178 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 CORO6Q6QEF8 472 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 DPPA2Q7Z7J5 298 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 ZFP82Q8N141 532 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TMEM217Q8N7C4 229 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 OR13C8Q8NGS7 320 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 OR52N5Q8NH56 324 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 NT5CQ8TCD5 201 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 LIN37Q96GY3 246 aaPredicted RBP9.78□□□□□ -0.84
CD44-201ENST00000263398 DOK1Q99704 481 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 ARHGDIGQ99819 225 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 CYSLTR2Q9NS75 346 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 DNAJC13O75165 2243 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 A0A0B4J203 849 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 SERTM1A2A2V5 107 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 OR5H14A6NHG9 310 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TAAR5O14804 337 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 DSCR3O14972 297 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 ICOSLGO75144 302 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 LAP3P28838 519 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 PTCRAQ6ISU1 281 aaPredicted RBP9.78□□□□□ -0.84
CD44-201ENST00000263398 SUMF1Q8NBK3 374 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 ATF6BQ99941 703 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 CDCP1Q9H5V8 836 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 PLEKHF2Q9H8W4 249 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TUBG2Q9NRH3 451 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 SLC22A13Q9Y226 551 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 HRH3Q9Y5N1 445 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 SCN1AP35498 2009 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 KCNE1BA0A087WTH5 132 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 NUDT19A8MXV4 375 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 HSBP1L1C9JCN9 74 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TIMM8AO60220 97 aaPredicted RBP9.78□□□□□ -0.84
CD44-201ENST00000263398 JTBO76095 146 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 CD3DP04234 171 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 ABOP16442 354 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TRIM61Q5EBN2 209 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 FAM219BQ5XKK7 198 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 TCTE3Q8IZS6 198 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 UHRF2Q96PU4 802 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 B3GAT1Q9P2W7 334 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 KCNG2Q9UJ96 466 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 KPTNQ9Y664 436 aa9.78□□□□□ -0.84
CD44-201ENST00000263398 KLRC4-KLRK1H3BQV0 150 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 HPNP05981 417 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 CTXN2P0C2S0 81 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 NKX2-1P43699 371 aaPredicted RBP9.77□□□□□ -0.84
CD44-201ENST00000263398 MMP15P51511 669 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 RAE1P78406 368 aaKnown RBP9.77□□□□□ -0.84
CD44-201ENST00000263398 LTC4SQ16873 150 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 OR10K2Q6IF99 312 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 LINC00696Q6ZRV3 163 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 TMPRSS11FQ6ZWK6 438 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 DERL3Q96Q80 235 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 ZNF629Q9UEG4 869 aaPredicted RBP9.77□□□□□ -0.84
CD44-201ENST00000263398 PURGQ9UJV8 347 aaKnown RBP9.77□□□□□ -0.84
CD44-201ENST00000263398 FLVCR2Q9UPI3 526 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 CSAG2Q9Y5P2 127 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 R4GMQ9 66 aa9.77□□□□□ -0.84
CD44-201ENST00000263398 RGS11O94810 467 aa9.77□□□□□ -0.85
CD44-201ENST00000263398 OLFM2O95897 454 aa9.77□□□□□ -0.85
CD44-201ENST00000263398 FOLR1P15328 257 aa9.77□□□□□ -0.85
CD44-201ENST00000263398 TGM1P22735 817 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms