RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ADAM19Q9H013 955 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 TMEM231Q9H6L2 316 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 RHBDD3Q9Y3P4 386 aa11.12□□□□□ -0.63
NUP88-201ENST00000225696 C9orf170A2RU37 121 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 ZNF98A6NK75 572 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 C17orf105B2RV13 164 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 C5orf67F2Z3F1 127 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 SCDO00767 359 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 HCRTR2O43614 444 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 HLA-DOBP13765 273 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 PGAM2P15259 253 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 AKR1C4P17516 323 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 HNRNPA2B1P22626 353 aaKnown RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 CD96P40200 585 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 AKR1D1P51857 326 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 EIF2B1Q14232 305 aaKnown RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 VWA2Q5GFL6 755 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 PRAMEF17Q5VTA0 474 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 ADGRE4PQ86SQ3 457 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 SLC25A42Q86VD7 318 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 PAQR4Q8N4S7 273 aaPredicted RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 OR5AP2Q8NGF4 316 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 PTPMT1Q8WUK0 201 aaPredicted RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 METTL21AQ8WXB1 218 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 EDAQ92838 391 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 MMABQ96EY8 250 aaPredicted RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 RRNAD1Q96FB5 475 aaKnown RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 MRGPRX1Q96LB2 322 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 GABRG3Q99928 467 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 SELENOIQ9C0D9 397 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 TLNRD1Q9H1K6 362 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 MYOZ1Q9NP98 299 aaPredicted RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 PRR13Q9NZ81 148 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 COMMD9Q9P000 198 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 SLCO1B1Q9Y6L6 691 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 RAB27BO00194 218 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 SULT1C2O00338 296 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 XKRYO14609 159 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 ERCC1P07992 297 aaPredicted RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 H2AFB1P0C5Y9 115 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 VAMP1P23763 118 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 IL13RA1P78552 427 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 SLC18B1Q6NT16 456 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 TAF8Q7Z7C8 310 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 LYG2Q86SG7 212 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 LYPD6Q86Y78 171 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 LINC00346Q8IVM7 164 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 ZNF440Q8IYI8 595 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 C19orf47Q8N9M1 422 aaKnown RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 OR2I1PQ8NGU4 316 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 PAQR8Q8TEZ7 354 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 ASB13Q8WXK3 278 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 OR11A1Q9GZK7 315 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 PIGMQ9H3S5 423 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 PNO1Q9NRX1 252 aaKnown RBP11.11□□□□□ -0.63
NUP88-201ENST00000225696 SLC5A6Q9Y289 635 aa11.11□□□□□ -0.63
NUP88-201ENST00000225696 LOC107986453A0A1B0GWG9 222 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 OR2T1O43869 369 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 SRSF10O75494 262 aaKnown RBP11.1□□□□□ -0.63
NUP88-201ENST00000225696 OR6A2O95222 327 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 CA3P07451 260 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 IL11P20809 199 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 HRH1P35367 487 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 SLC37A1P57057 533 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 ROM1Q03395 351 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 FMODQ06828 376 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 UNC119Q13432 240 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 PTCRAQ6ISU1 281 aaPredicted RBP11.1□□□□□ -0.63
NUP88-201ENST00000225696 TRAPPC6BQ86SZ2 158 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 ZNF584Q8IVC4 421 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 OR4A4PQ8NGN8 299 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 OR13C3Q8NGS6 347 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 ZNF519Q8TB69 540 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 GPBAR1Q8TDU6 330 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 MITD1Q8WV92 249 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 AQP3Q92482 292 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 MAP3K3Q99759 626 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 OR8D2Q9GZM6 311 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 CNTD2Q9H8S5 307 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 SCPEP1Q9HB40 452 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 CKLFQ9UBR5 152 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 GDF2Q9UK05 429 aaPredicted RBP11.1□□□□□ -0.63
NUP88-201ENST00000225696 COA3Q9Y2R0 106 aaPredicted RBP11.1□□□□□ -0.63
NUP88-201ENST00000225696 C13orf42A0A1B0GVH6 325 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 CLDN4O14493 209 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 IL33O95760 270 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 CD37P11049 281 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 GNB3P16520 340 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 NPBWR1P48145 328 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 PRKXP51817 358 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 EFNA3P52797 238 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 HHEXQ03014 270 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 ZP2Q05996 745 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 ZNF260Q3ZCT1 412 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 RAB12Q6IQ22 244 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 HERVK_113Q902F9 699 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 GAL3ST4Q96RP7 486 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 PTGES2Q9H7Z7 377 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 G6PC2Q9NQR9 355 aa11.1□□□□□ -0.63
NUP88-201ENST00000225696 LRP4O75096 1905 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms