RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-223ENST00000637823 ALKBH3Q96Q83 286 aaPredicted RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 FOXB1Q99853 325 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 WACQ9BTA9 647 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 OR51E2Q9H255 320 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 ACOXLQ9NUZ1 547 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 ST6GALNAC2Q9UJ37 374 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 GDF2Q9UK05 429 aaPredicted RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 STUB1Q9UNE7 303 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 ZNF835Q9Y2P0 537 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 SF3B6Q9Y3B4 125 aaKnown RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 SIRT4Q9Y6E7 314 aaPredicted RBP10.36□□□□□ -0.75
CLN6-223ENST00000637823 BOD1L1Q8NFC6 3051 aa10.36□□□□□ -0.75
CLN6-223ENST00000637823 TRBV2A0A0J9YWF9 115 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 PNMA8CA0A1B0GUJ8 204 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 TRIM64BA6NI03 449 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 ERVH48-1M5A8F1 160 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 PRRG2O14669 202 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 SLC22A1O15245 554 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 IGHV3-9P01782 118 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 H2BFMP0C1H6 154 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 EDN3P14138 238 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 GALP22466 123 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 DCTDP32321 178 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 TIMP3P35625 211 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 PSMB10P40306 273 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 CRYBB2P43320 205 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 KIR2DL2P43627 348 aaPredicted RBP10.35□□□□□ -0.75
CLN6-223ENST00000637823 RIDAP52758 137 aaKnown RBP10.35□□□□□ -0.75
CLN6-223ENST00000637823 ARF1P84077 181 aaKnown RBP10.35□□□□□ -0.75
CLN6-223ENST00000637823 RBPJQ06330 500 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 FAPQ12884 760 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 AQP6Q13520 282 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 ZNF544Q6NX49 715 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 LRRN1Q6UXK5 716 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 ZNF627Q7L945 461 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 SYT9Q86SS6 491 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 SLC22A24Q8N4F4 322 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 MS4A15Q8N5U1 240 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 OR6K3Q8NGY3 331 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 RNF166Q96A37 237 aaPredicted RBP10.35□□□□□ -0.75
CLN6-223ENST00000637823 SLAMF6Q96DU3 332 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 MAP6Q96JE9 813 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 ZFP3Q96NJ6 502 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 COQ7Q99807 217 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 KCNN2Q9H2S1 579 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 TP63Q9H3D4 680 aaPredicted RBP10.35□□□□□ -0.75
CLN6-223ENST00000637823 C12orf49Q9H741 205 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 CENPMQ9NSP4 180 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 ASH2LQ9UBL3 628 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 SSR3Q9UNL2 185 aa10.35□□□□□ -0.75
CLN6-223ENST00000637823 LOC100506127A0A0U1RQW1 187 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 TRDV1A0A1B0GX56 115 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 TTLL8A6PVC2 850 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 ZNF878C9JN71 531 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 GPRIN2O60269 458 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 GPX5O75715 221 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 RPP14O95059 124 aaKnown RBP10.34□□□□□ -0.75
CLN6-223ENST00000637823 FARS2O95363 451 aaKnown RBP10.34□□□□□ -0.75
CLN6-223ENST00000637823 CNOT4O95628 575 aaKnown RBP10.34□□□□□ -0.75
CLN6-223ENST00000637823 IL2RAP01589 272 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 HLA-DPB1P04440 258 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 NR4A1P22736 598 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 MPGP29372 298 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 OPRL1P41146 370 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 CCR9P51686 369 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 SH3BGRP55822 239 aaPredicted RBP10.34□□□□□ -0.75
CLN6-223ENST00000637823 PER3P56645 1201 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 PCBD1P61457 104 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 ALKBH1Q13686 389 aaKnown RBP10.34□□□□□ -0.75
CLN6-223ENST00000637823 CDK5R1Q15078 307 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 CD200R1LQ6Q8B3 271 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 ARL9Q6T311 187 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 ZNF813Q6ZN06 617 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 CFAP77Q6ZQR2 320 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 SEM1Q6ZVN7 128 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 SPATC1Q76KD6 591 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 DOLPP1Q86YN1 238 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 ALDH16A1Q8IZ83 802 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 GCNT2Q8N0V5 402 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 LRRC18Q8N456 261 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 OR10S1Q8NGN2 331 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 RPS4Y2Q8TD47 263 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 HTRA1Q92743 480 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 GHSRQ92847 366 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 RPL3LQ92901 407 aaKnown RBP10.34□□□□□ -0.75
CLN6-223ENST00000637823 SMIM19Q96E16 107 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 FBXO17Q96EF6 278 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 WBP1Q96G27 269 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 SH3GL3Q99963 347 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 CHCHD6Q9BRQ6 235 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 NIPAL2Q9H841 368 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 PLSCR4Q9NRQ2 329 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 MALT1Q9UDY8 824 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 PRSS50Q9UI38 385 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 GRIP1Q9Y3R0 1128 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 LRP12Q9Y561 859 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 FAM215AQ9Y5M1 114 aa10.34□□□□□ -0.75
CLN6-223ENST00000637823 LAMA5O15230 3695 aa10.33□□□□□ -0.76
CLN6-223ENST00000637823 RER1O15258 196 aa10.33□□□□□ -0.76
CLN6-223ENST00000637823 ATE1O95260 518 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms