RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MS4A5Q9H3V2 200 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 CDH20Q9HBT6 801 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 DYNLRB1Q9NP97 96 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 CCNB1IP1Q9NPC3 277 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 MYEF2Q9P2K5 600 aaKnown RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 IER3IP1Q9Y5U9 82 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 SONP18583 2426 aaKnown RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 YLPM1P49750 1951 aaKnown RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 IGLV3-9A0A075B6K5 115 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 PRSS37A4D1T9 235 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 M0R233 179 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 RRP9O43818 475 aaKnown RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 CRLF1O75462 422 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 RAD52P43351 418 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 HSF2Q03933 536 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 ENDOGQ14249 297 aaKnown RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 RCN1Q15293 331 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 SLC36A3Q495N2 470 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 GPR139Q6DWJ6 353 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 RGS7BPQ6MZT1 257 aaPredicted RBP16.51■□□□□ 0.23
CLN3-260ENST00000637578 SYT9Q86SS6 491 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 ZNF786Q8N393 782 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 OR52L1Q8NGH7 329 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 RASD2Q96D21 266 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 ZNF570Q96NI8 536 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 IFT27Q9BW83 186 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 BCL2L14Q9BZR8 327 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 OR2H1Q9GZK4 316 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 TBC1D23Q9NUY8 699 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 TIMM10BQ9Y5J6 103 aa16.51■□□□□ 0.23
CLN3-260ENST00000637578 LOC100509620A0A075B734 347 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 TEX13CA0A0J9YWL9 993 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 H7C1C5 153 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 TXNDC12O95881 172 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 SCG5P05408 212 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 FAM157BP0CG42 384 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 DAOP14920 347 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 STOMP27105 288 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 SDHAP31040 664 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 APLNRP35414 380 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 LCN6P62502 163 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 ZNF540Q8NDQ6 660 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 ERMAPQ96PL5 475 aaPredicted RBP16.5■□□□□ 0.23
CLN3-260ENST00000637578 CIB1Q99828 191 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 WACQ9BTA9 647 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 WNT5BQ9H1J7 359 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 POLE4Q9NR33 117 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 PAPOLBQ9NRJ5 636 aaKnown RBP16.5■□□□□ 0.23
CLN3-260ENST00000637578 VSX1Q9NZR4 365 aaPredicted RBP16.5■□□□□ 0.23
CLN3-260ENST00000637578 FZR1Q9UM11 496 aa16.5■□□□□ 0.23
CLN3-260ENST00000637578 H3BN98 237 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 BHLHE40O14503 412 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 XKRYO14609 159 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 ICMTO60725 284 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 MITFO75030 526 aaPredicted RBP16.49■□□□□ 0.23
CLN3-260ENST00000637578 OSMP13725 252 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 APEHP13798 732 aaKnown RBP16.49■□□□□ 0.23
CLN3-260ENST00000637578 MSR1P21757 451 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 GUCA1AP43080 201 aaPredicted RBP16.49■□□□□ 0.23
CLN3-260ENST00000637578 RPS6KA3P51812 740 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 PCBD1P61457 104 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 KRR1Q13601 381 aaKnown RBP16.49■□□□□ 0.23
CLN3-260ENST00000637578 KDM4DQ6B0I6 523 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 PRIMA1Q86XR5 153 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 AKR7LQ8NHP1 331 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 UBASH3BQ8TF42 649 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 DNAJC9Q8WXX5 260 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 ZNF416Q9BWM5 594 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 TSSK6Q9BXA6 273 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 DUSP13Q9UII6 198 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 JMJD1CQ15652 2540 aa16.49■□□□□ 0.23
CLN3-260ENST00000637578 A0A1W2PPL8 197 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 SOCS2O14508 198 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 ARPC3O15145 178 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 IGHV4-31P0DP07 118 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 ANPEPP15144 967 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 CTLA4P16410 223 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 ALDH3B1P43353 468 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 ERVS71-1P61550 626 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 RIN1Q13671 783 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 C6orf52Q5T4I8 152 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 ADCK1Q86TW2 530 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 TEX47Q8TBZ9 253 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 C11orf40Q8WZ69 217 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 BPESC1Q9GZL8 116 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 TPK1Q9H3S4 243 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 YAE1D1Q9NRH1 226 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 TMEFF2Q9UIK5 374 aaPredicted RBP16.48■□□□□ 0.23
CLN3-260ENST00000637578 ABCA2Q9BZC7 2435 aa16.48■□□□□ 0.23
CLN3-260ENST00000637578 CHD3Q12873 2000 aaKnown RBP16.48■□□□□ 0.23
CLN3-260ENST00000637578 IGHV4-61A0A0C4DH41 118 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 C12orf71A8MTZ7 269 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 CLPTM1O96005 669 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 POU1F1P28069 291 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 WNT5AP41221 380 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 MAD2L1BPQ15013 274 aaPredicted RBP16.47■□□□□ 0.23
CLN3-260ENST00000637578 ALDH16A1Q8IZ83 802 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 PARP8Q8N3A8 854 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 IQCF1Q8N6M8 205 aa16.47■□□□□ 0.23
CLN3-260ENST00000637578 OR4Q3Q8NH05 313 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms