RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PRKCDQ05655 676 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 DEFB108BQ8NET1 73 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 SGMS2Q8NHU3 365 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 CMBLQ96DG6 245 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 DIRC2Q96SL1 478 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 FNDC11Q9BVV2 318 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 DDX28Q9NUL7 540 aaKnown RBP13.62□□□□□ -0.23
CLN3-246ENST00000636228 ZNF69Q9UC07 566 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 PURGQ9UJV8 347 aaKnown RBP13.62□□□□□ -0.23
CLN3-246ENST00000636228 PCDHGB1Q9Y5G3 927 aa13.62□□□□□ -0.23
CLN3-246ENST00000636228 A0A087WUU8 490 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 ELOVL7A1L3X0 281 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 A6NIZ1 184 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 CDC42EP2O14613 210 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 IMPA2O14732 288 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 DOK2O60496 412 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 FOXH1O75593 365 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 NPPAP01160 153 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 IFNA8P32881 189 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 RPL4P36578 427 aaKnown RBP13.61□□□□□ -0.23
CLN3-246ENST00000636228 GPR4P46093 362 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 RAP1BP61224 184 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 RAP1AP62834 184 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 TRAM2Q15035 370 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 COQ5Q5HYK3 327 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 KLF17Q5JT82 389 aaPredicted RBP13.61□□□□□ -0.23
CLN3-246ENST00000636228 CGB2Q6NT52 195 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 ARL9Q6T311 187 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 HDXQ7Z353 690 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 C1orf174Q8IYL3 243 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 OR5AS1Q8N127 324 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 FNDC8Q8TC99 324 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 ITLN1Q8WWA0 313 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 ZMYND19Q96E35 227 aaPredicted RBP13.61□□□□□ -0.23
CLN3-246ENST00000636228 Q96M85 177 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 RERGLQ9H628 205 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 FGFR1OP2Q9NVK5 253 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 GID8Q9NWU2 228 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 CMTM6Q9NX76 183 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 GRHPRQ9UBQ7 328 aa13.61□□□□□ -0.23
CLN3-246ENST00000636228 CGGBP1Q9UFW8 167 aaPredicted RBP13.61□□□□□ -0.23
CLN3-246ENST00000636228 NDRG4Q9ULP0 352 aaKnown RBP13.61□□□□□ -0.23
CLN3-246ENST00000636228 BBIP1A8MTZ0 92 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 H3BSA7 217 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ZNF205O95201 554 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ZNF682O95780 498 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 GSTM3P21266 225 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 SLC6A9P48067 706 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 SLC9A3P48764 834 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ZNF154Q13106 437 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ZMYND11Q15326 602 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ZMAT1Q5H9K5 638 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ARMCX4Q5H9R4 360 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 FAM205BPQ63HN1 556 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ZNF730Q6ZMV8 503 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 VASH1Q7L8A9 365 aaPredicted RBP13.6□□□□□ -0.23
CLN3-246ENST00000636228 SYT9Q86SS6 491 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 LRRC28Q86X40 367 aaPredicted RBP13.6□□□□□ -0.23
CLN3-246ENST00000636228 OFCC1Q8IZS5 231 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 POU5F2Q8N7G0 328 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 ZNF283Q8N7M2 679 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 PCYOX1LQ8NBM8 494 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 TAF15Q92804 592 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLN3-246ENST00000636228 RCN3Q96D15 328 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 SAMD8Q96LT4 415 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 NTN4Q9HB63 628 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 PATZ1Q9HBE1 687 aaKnown RBP13.6□□□□□ -0.23
CLN3-246ENST00000636228 TBCCD1Q9NVR7 557 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 SOX21Q9Y651 276 aaPredicted RBP13.6□□□□□ -0.23
CLN3-246ENST00000636228 AUP1Q9Y679 476 aa13.6□□□□□ -0.23
CLN3-246ENST00000636228 IGHV3OR16-10A0A075B7F0 116 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 IGHV3-64DA0A0J9YX35 117 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 SGCEO43556 437 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 IFNW1P05000 195 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 DBHP09172 617 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 CTLA4P16410 223 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 KITLGP21583 273 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 TNFSF4P23510 183 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 BTG1P62324 171 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 MAPRE2Q15555 327 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 MESTQ5EB52 335 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 ZER1Q7Z7L7 766 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 JAZF1Q86VZ6 243 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 KLHL36Q8N4N3 616 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 LZICQ8WZA0 190 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 RASD2Q96D21 266 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 HAVCR1Q96D42 359 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 OR2V2Q96R30 315 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 SIGLEC11Q96RL6 698 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 ARMCX1Q9P291 453 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 NUP50Q9UKX7 468 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 PPP1R3CQ9UQK1 317 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 ARHGAP32A7KAX9 2087 aa13.59□□□□□ -0.23
CLN3-246ENST00000636228 PPIAL4EA0A075B759 164 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 PPIAL4CA0A0B4J2A2 164 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 TEX13CA0A0J9YWL9 993 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 PRSS37A4D1T9 235 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 HTR3EA5X5Y0 456 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 PPIAL4DF5H284 164 aa13.58□□□□□ -0.24
CLN3-246ENST00000636228 KCNAB3O43448 404 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms