RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 C12orf73Q69YU5 71 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 PLBD1Q6P4A8 553 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 DTX2Q86UW9 622 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 PAQR4Q8N4S7 273 aaPredicted RBP17.55■□□□□ 0.4
PTCD3-220ENST00000627371 OTULINQ96BN8 352 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 MBD6Q96DN6 1003 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 POM121L2Q96KW2 1035 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 RIBC2Q9H4K1 309 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 ZNF442Q9H7R0 627 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 CDH20Q9HBT6 801 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 HINT3Q9NQE9 182 aaKnown RBP17.55■□□□□ 0.4
PTCD3-220ENST00000627371 SPEF1Q9Y4P9 236 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 ORC6Q9Y5N6 252 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 ARFGEF3Q5TH69 2177 aa17.55■□□□□ 0.4
PTCD3-220ENST00000627371 MYO9AB2RTY4 2548 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 ARID1AO14497 2285 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 TMCC2O75069 709 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 COX5BP10606 129 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 ZNF823P16415 610 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 FMO3P31513 532 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 APOBEC3AP31941 199 aaPredicted RBP17.54■□□□□ 0.4
PTCD3-220ENST00000627371 GGT2P36268 569 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 HIST1H3AP68431 136 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 SNTB2Q13425 540 aaKnown RBP17.54■□□□□ 0.4
PTCD3-220ENST00000627371 HIST2H3PS2Q5TEC6 136 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 KRT80Q6KB66 452 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 LYPD4Q6UWN0 246 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 HIST2H3AQ71DI3 136 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 VASH1Q7L8A9 365 aaPredicted RBP17.54■□□□□ 0.4
PTCD3-220ENST00000627371 CPOQ8IVL8 374 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 FBXL14Q8N1E6 418 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 MUC15Q8N387 334 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 GJC3Q8NFK1 279 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 OR6K6Q8NGW6 343 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 EME1Q96AY2 570 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 PLEK2Q9NYT0 353 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 CYB5R1Q9UHQ9 305 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 NDRG4Q9ULP0 352 aaKnown RBP17.54■□□□□ 0.4
PTCD3-220ENST00000627371 LAMP3Q9UQV4 416 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 COMMD3-BMI1R4GMX3 469 aa17.54■□□□□ 0.4
PTCD3-220ENST00000627371 LOC100509620A0A075B734 347 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 TVP23AA6NH52 213 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 RER1O15258 196 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 PRODHO43272 600 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 GLCEO94923 617 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 ANPEPP15144 967 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 POLR2IP36954 125 aaKnown RBP17.53■□□□□ 0.4
PTCD3-220ENST00000627371 GDI2P50395 445 aaKnown RBP17.53■□□□□ 0.4
PTCD3-220ENST00000627371 RAD23AP54725 363 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 ADAM8P78325 824 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 RAB35Q15286 201 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 CCDC92Q53HC0 331 aaPredicted RBP17.53■□□□□ 0.4
PTCD3-220ENST00000627371 AGAP6Q5VW22 663 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 SLC18B1Q6NT16 456 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 CORO6Q6QEF8 472 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 VHLLQ6RSH7 139 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 ZBTB49Q6ZSB9 765 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 CXXC5Q7LFL8 322 aaKnown RBP17.53■□□□□ 0.4
PTCD3-220ENST00000627371 LINC00346Q8IVM7 164 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 TMEM171Q8WVE6 324 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 TRAF4Q9BUZ4 470 aaPredicted RBP17.53■□□□□ 0.4
PTCD3-220ENST00000627371 CDADC1Q9BWV3 514 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 GRIP2Q9C0E4 1043 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 OR51V1Q9H2C8 321 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 BEX4Q9NWD9 120 aaPredicted RBP17.53■□□□□ 0.4
PTCD3-220ENST00000627371 ATPIF1Q9UII2 106 aa17.53■□□□□ 0.4
PTCD3-220ENST00000627371 USF3Q68DE3 2245 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 C5orf49A4QMS7 147 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 OR6C6A6NF89 314 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 SYNGR3O43761 229 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 PRKYO43930 277 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 CCNOP22674 350 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 PCSK6P29122 969 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 THBS4P35443 961 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 GLRXP35754 106 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 HTR5AP47898 357 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 ELF3P78545 371 aaPredicted RBP17.52■□□□□ 0.4
PTCD3-220ENST00000627371 DEFB113Q30KQ7 82 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 ZNF511Q8NB15 262 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 SLC29A1Q99808 456 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 HDHD2Q9H0R4 259 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 WDR76Q9H967 626 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 CBLN4Q9NTU7 201 aa17.52■□□□□ 0.4
PTCD3-220ENST00000627371 GDF2Q9UK05 429 aaPredicted RBP17.52■□□□□ 0.4
PTCD3-220ENST00000627371 CD8AP01732 235 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 SLC2A5P22732 501 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 PRRC2AP48634 2157 aaKnown RBP17.51■□□□□ 0.39
PTCD3-220ENST00000627371 ENTPD1P49961 510 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 RPS23P62266 143 aaKnown RBP17.51■□□□□ 0.39
PTCD3-220ENST00000627371 EFNB1P98172 346 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 ADIPOQQ15848 244 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 PCK2Q16822 640 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 SLC35D3Q5M8T2 416 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 C11orf71Q6IPW1 123 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 CFAP77Q6ZQR2 320 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 BBS1Q8NFJ9 593 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 OR2AJ1Q8NGZ0 328 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 OR1F12Q8NHA8 337 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 CXorf56Q9H5V9 222 aa17.51■□□□□ 0.39
PTCD3-220ENST00000627371 MARCH7Q9H992 704 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms