RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CD86P42081 329 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 TAS2R31P59538 309 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 ACTG2P63267 376 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 CRADDP78560 199 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF77Q15935 545 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 MPV17L2Q567V2 206 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 CFAP157Q5JU67 520 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 KRTAP5-10Q6L8G5 202 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 EID2Q8N6I1 236 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 FBXL13Q8NEE6 735 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 TTLQ8NG68 377 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 PIBF1Q8WXW3 757 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 MRGPRFQ96AM1 343 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 TCEANC2Q96MN5 208 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF317Q96PQ6 595 aaPredicted RBP0.85□□□□□ -2.27
SCN1A-208ENST00000625916 HSD17B10Q99714 261 aaKnown RBP0.85□□□□□ -2.27
SCN1A-208ENST00000625916 RSG1Q9BU20 258 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 FGF23Q9GZV9 251 aaPredicted RBP0.85□□□□□ -2.27
SCN1A-208ENST00000625916 ANKRD19PQ9H560 264 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 EXOSC4Q9NPD3 245 aaKnown RBP0.85□□□□□ -2.27
SCN1A-208ENST00000625916 CTNNA3Q9UI47 895 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 TSSC4Q9Y5U2 329 aaPredicted RBP0.85□□□□□ -2.27
SCN1A-208ENST00000625916 PEX16Q9Y5Y5 336 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 AP1M2Q9Y6Q5 423 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 MAPK8IP3Q9UPT6 1336 aa0.85□□□□□ -2.27
SCN1A-208ENST00000625916 ZNF816-ZNF321PA0A0X1KG74 233 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 HAS3O00219 553 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 MANBAO00462 879 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 MRPS12O15235 138 aaKnown RBP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 SNNO75324 88 aaPredicted RBP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 SURF6O75683 361 aaKnown RBP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 CD3GP09693 182 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 PSMB5P28074 263 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 IFNA8P32881 189 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 HCAR3P49019 387 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 CCNG1P51959 295 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 CDKN2DP55273 166 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 GPX6P59796 221 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 BPIFB3P59826 476 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 YWHAGP61981 247 aaKnown RBP eCLIP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 MXD1Q05195 221 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 PPIL2Q13356 520 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 PDK3Q15120 406 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 CCDC152Q4G0S7 254 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 TCEAL5Q5H9L2 206 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 AVPI1Q5T686 147 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 SLC25A48Q6ZT89 311 aaKnown RBP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 H2BFWTQ7Z2G1 175 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 TGIF2LXQ8IUE1 241 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 PSTKQ8IV42 348 aaKnown RBP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 PDIK1LQ8N165 341 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 SPANXA2-OT1Q8N9U9 137 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 OR4F6Q8NGB9 312 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 OR1L4Q8NGR5 311 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 OR6N1Q8NGY5 312 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 KLF14Q8TD94 323 aaPredicted RBP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 TCEAL3Q969E4 200 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 GALNT14Q96FL9 552 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 RHOXF2Q9BQY4 288 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 TM2D3Q9BRN9 247 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 SLC39A3Q9BRY0 314 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 DHX35Q9H5Z1 703 aaKnown RBP0.84□□□□□ -2.27
SCN1A-208ENST00000625916 C8orf17Q9NRJ1 99 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 C21orf62Q9NYP8 219 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 ING4Q9UNL4 249 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 ST3GAL6Q9Y274 331 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 GOLT1BQ9Y3E0 138 aa0.84□□□□□ -2.27
SCN1A-208ENST00000625916 SEC16AO15027 2179 aa0.84□□□□□ -2.28
SCN1A-208ENST00000625916 CNTNAP1P78357 1384 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 IGHV7-4-1A0A0J9YVY3 117 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 FAM47DPA6NHR8 397 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 SNTNA6NMZ2 147 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 GMFGO60234 142 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 RDH16O75452 317 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 EEDO75530 441 aaKnown RBP0.83□□□□□ -2.28
SCN1A-208ENST00000625916 SLC22A5O76082 557 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 CLIC3O95833 236 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 TSPAN12O95859 305 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 NDUFB10O96000 172 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 PABPC4LP0CB38 370 aaKnown RBP0.83□□□□□ -2.28
SCN1A-208ENST00000625916 RAB3AP20336 220 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 P2RX1P51575 399 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 PRMT2P55345 433 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 CCNA1P78396 465 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 MRPS22P82650 360 aaKnown RBP0.83□□□□□ -2.28
SCN1A-208ENST00000625916 CDK5Q00535 292 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 ZNF235Q14590 738 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 RNASE13Q5GAN3 156 aaKnown RBP0.83□□□□□ -2.28
SCN1A-208ENST00000625916 ATAD3BQ5T9A4 648 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 FAM222AQ5U5X8 452 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 HCP5Q6MZN7 132 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 ANKRD26P1Q6NSI1 321 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 SLC25A24Q6NUK1 477 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 GMCL1P1Q8NEA9 526 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 OR1L6Q8NGR2 347 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 UBE2Q2Q8WVN8 375 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 SYAP1Q96A49 352 aaPredicted RBP0.83□□□□□ -2.28
SCN1A-208ENST00000625916 WDR34Q96EX3 536 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 C12orf42Q96LP6 360 aa0.83□□□□□ -2.28
SCN1A-208ENST00000625916 IP6K3Q96PC2 410 aa0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms