RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 A6NIZ1 184 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ZSCAN5BA6NJL1 495 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 LRRN3E7EW58 273 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 AHCYL1O43865 530 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 TPST1O60507 370 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 FBXO24O75426 580 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ABHD16AO95870 558 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 IFNA14P01570 189 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 MT-ND1P03886 318 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ASAH2BP0C7U1 165 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 KITP10721 976 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 IRF2P14316 349 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 RPS2P15880 293 aaKnown RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 ZNF32P17041 273 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 KITLGP21583 273 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 MSR1P21757 451 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ZFP36P26651 326 aaKnown RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 PCGF2P35227 344 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SRP9P49458 86 aaKnown RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 RAG2P55895 527 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 PCBP3P57721 371 aaKnown RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 RAP1BP61224 184 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ERVS71-1P61550 626 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 RAP1AP62834 184 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 GNB2P62879 340 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 TNP2Q05952 138 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 PAX8Q06710 450 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 CD47Q08722 323 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SCRN3Q0VDG4 424 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 MELKQ14680 651 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SGCAQ16586 387 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 CYP51A1Q16850 503 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 GTDC1Q4AE62 458 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ENTPD8Q5MY95 495 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 CD276Q5ZPR3 534 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 OLFML2AQ68BL7 652 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SLC2A7Q6PXP3 512 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 PIGWQ7Z7B1 504 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ZNF101Q8IZC7 436 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 DTX3Q8N9I9 347 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 OR8B3Q8NGG8 313 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 FGFBP3Q8TAT2 258 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 TBC1D15Q8TC07 691 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SSMEM1Q8WWF3 244 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 LIPHQ8WWY8 451 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 RAB40AQ8WXH6 277 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ASB10Q8WXI3 467 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 LRTOMTQ8WZ04 291 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ERGIC1Q969X5 290 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SPDL1Q96EA4 605 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 NEIL1Q96FI4 390 aaPredicted RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 C4orf45Q96LM5 186 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 OR8B2Q96RD0 313 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 DCLRE1CQ96SD1 692 aaKnown RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 ZNF347Q96SE7 839 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ARHGDIGQ99819 225 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SH3GL1Q99961 368 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ZNF426Q9BUY5 554 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SSBP3Q9BWW4 388 aaPredicted RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 OR2H1Q9GZK4 316 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 NSRP1Q9H0G5 558 aaKnown RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 TXNIPQ9H3M7 391 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 PRDM13Q9H4Q3 707 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 LIN7BQ9HAP6 207 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 MRGBPQ9NV56 204 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ARMCX1Q9P291 453 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 ATPIF1Q9UII2 106 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 BAG5Q9UL15 447 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 SLC7A7Q9UM01 511 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 NOP16Q9Y3C1 178 aaKnown RBP5.3□□□□□ -1.56
CUX1-220ENST00000607092 CACNG2Q9Y698 323 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 USH1CQ9Y6N9 552 aa5.3□□□□□ -1.56
CUX1-220ENST00000607092 NOTCH3Q9UM47 2321 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 IGHV2-70DA0A0C4DH43 119 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 TMEM238LA0A1B0GVL6 79 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 CPSF4LA6NMK7 179 aaKnown RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 SRRM5B3KS81 715 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 F5H0A9 414 aaPredicted RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 TRAPPC2LH3BP13 241 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 M0QX08 132 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 KPNA4O00629 521 aaPredicted RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 PHYHO14832 338 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 ENSAO43768 121 aaKnown RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 TRMUO75648 421 aaKnown RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 PLATP00750 562 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 NGFP01138 241 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 WNT2P09544 360 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 RAC2P15153 192 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 SELEP16581 610 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 HOXB9P17482 250 aaPredicted RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 ATF4P18848 351 aaPredicted RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 FUT1P19526 365 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 AQP1P29972 269 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 MPV17P39210 176 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 WNT5AP41221 380 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 NPY4RP50391 375 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 UGT2B15P54855 530 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 PSG4Q00888 419 aa5.29□□□□□ -1.56
CUX1-220ENST00000607092 RPL18Q07020 188 aaKnown RBP5.29□□□□□ -1.56
CUX1-220ENST00000607092 HLXQ14774 488 aaPredicted RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms