RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 GMPPBQ9Y5P6 360 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 ARFGEF3Q5TH69 2177 aa12□□□□□ -0.49
SHKBP1-218ENST00000598907 TEX13CA0A0J9YWL9 993 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 CENPBD1B2RD01 187 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 ATP6V1G2-DDX39BF2Z307 99 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 SERPINI2O75830 405 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 IGHV3-9P01782 118 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 HIST1H1CP16403 213 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 COX5AP20674 150 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 CDKN2AP42771 156 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 BIDP55957 195 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 CLDN17P56750 224 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 IL18R1Q13478 541 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 MELKQ14680 651 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 HIST3H3Q16695 136 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 MESTQ5EB52 335 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF691Q5VV52 312 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 TMEM123Q8N131 208 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 TRUB1Q8WWH5 349 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 CYGBQ8WWM9 190 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 HDAC2Q92769 488 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 RASD2Q96D21 266 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 OR2M2Q96R28 347 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 EMC6Q9BV81 110 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 TVP23BQ9NYZ1 205 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 EMC3Q9P0I2 261 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 KLHL21Q9UJP4 597 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 LRRC42Q9Y546 428 aa11.99□□□□□ -0.49
SHKBP1-218ENST00000598907 CIB4A0PJX0 185 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 A6NIZ1 184 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 AHCYL1O43865 530 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 TRMUO75648 421 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC2A10O95528 541 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 GNAO1P09471 354 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 TACSTD2P09758 323 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 PGA4P0DJD7 388 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 PGA3P0DJD8 388 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 ACADSP16219 412 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 GABRB1P18505 474 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 CDC42P60953 191 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 RAP1BP61224 184 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 RAP1AP62834 184 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 FOXL1Q12952 345 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 TOP3AQ13472 1001 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 KRR1Q13601 381 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SWI5Q1ZZU3 235 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 MST1LQ2TV78 715 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC25A30Q5SVS4 291 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC35F1Q5T1Q4 408 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 PTCHD4Q6ZW05 846 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 USP43Q70EL4 1123 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SSX8Q7RTT4 187 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 HDDC2Q7Z4H3 204 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 ADCK1Q86TW2 530 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 P2RY8Q86VZ1 359 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF433Q8N7K0 673 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC37A3Q8NCC5 494 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 NPEPL1Q8NDH3 523 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 OR4K13Q8NH42 304 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 FBLIM1Q8WUP2 373 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 UBE2FQ969M7 185 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 NMD3Q96D46 503 aaKnown RBP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC25A44Q96H78 314 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 MUS81Q96NY9 551 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC38A2Q96QD8 506 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC6A7Q99884 636 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 TEX12Q9BXU0 123 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 ANKRD60Q9BZ19 345 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 PRRG3Q9BZD7 231 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 NMNAT2Q9BZQ4 307 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 FN3KQ9H479 309 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 ESM1Q9NQ30 184 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 PARPBPQ9NWS1 579 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 HIF1ANQ9NWT6 349 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 VSX1Q9NZR4 365 aaPredicted RBP11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 SLC25A15Q9Y619 301 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 HSPE1-MOB4S4R3N1 261 aa11.98□□□□□ -0.49
SHKBP1-218ENST00000598907 PRSS37A4D1T9 235 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 OR6C68A6NDL8 312 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 DENRO43583 198 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 AKAP8O43823 692 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 PRKYO43930 277 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 CLIC3O95833 236 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 MYF6P23409 242 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 NOS3P29474 1203 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 SELENOPP49908 381 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF133P52736 654 aaPredicted RBP11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 ISL1P61371 349 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 SNRPGP62308 76 aaKnown RBP11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 SNAPC1Q16533 368 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 CASP12Q6UXS9 341 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 AAED1Q7RTV5 226 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 C20orf196Q8IYI0 205 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 ZNF100Q8IYN0 542 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 ENTHD1Q8IYW4 607 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 UBE2J2Q8N2K1 259 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 TCEANCQ8N8B7 351 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 OR52E2Q8NGJ4 325 aa11.97□□□□□ -0.49
SHKBP1-218ENST00000598907 OR8J1Q8NGP2 316 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms