RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 APLNRP35414 380 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 SPOCK1Q08629 439 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 TBC1D28Q2M2D7 210 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 TEX30Q5JUR7 227 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 AADACL4Q5VUY2 407 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 TTC23Q5W5X9 447 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 SLC18B1Q6NT16 456 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 MEPCEQ7L2J0 689 aaKnown RBP12.46□□□□□ -0.41
VRK3-213ENST00000597215 CDC20BQ86Y33 519 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 ERI1Q8IV48 349 aaKnown RBP12.46□□□□□ -0.41
VRK3-213ENST00000597215 ZNF584Q8IVC4 421 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 LINC00346Q8IVM7 164 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 DHRSXQ8N5I4 330 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 SLC30A7Q8NEW0 376 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 KBTBD8Q8NFY9 601 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 OR1J2Q8NGS2 313 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 OR6N2Q8NGY6 317 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 NRG4Q8WWG1 115 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 CYGBQ8WWM9 190 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 INTS14Q96SY0 518 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 WDR76Q9H967 626 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 MARCH7Q9H992 704 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 PLEK2Q9NYT0 353 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 CYB5R1Q9UHQ9 305 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 GDF2Q9UK05 429 aaPredicted RBP12.46□□□□□ -0.41
VRK3-213ENST00000597215 POU2F3Q9UKI9 436 aa12.46□□□□□ -0.41
VRK3-213ENST00000597215 CCDC182A6NF36 153 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 SHISA9B4DS77 424 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 ATP6V1G2-DDX39BF2Z307 99 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 ZNF593O00488 134 aaPredicted RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 RER1O15258 196 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 MPZL2O60487 215 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 SPARCP09486 303 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 COX5BP10606 129 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 STOMP27105 288 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 APEX1P27695 318 aaKnown RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 CALCRP30988 508 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 HTR5AP47898 357 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 GDI2P50395 445 aaKnown RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 CDH11P55287 796 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 SNRPGP62308 76 aaKnown RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 HIST1H3AP68431 136 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 RAB35Q15286 201 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 PCK2Q16822 640 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 ZNF672Q499Z4 452 aaPredicted RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 HIST2H3PS2Q5TEC6 136 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 ZNF774Q6NX45 483 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 CORO6Q6QEF8 472 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 HIST2H3AQ71DI3 136 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 VASH1Q7L8A9 365 aaPredicted RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 SHFQ7M4L6 423 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 BCDIN3DQ7Z5W3 292 aaKnown RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 TIGD4Q8IY51 512 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 CPEB3Q8NE35 698 aaKnown RBP12.45□□□□□ -0.42
VRK3-213ENST00000597215 OR4F15Q8NGB8 312 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 RFKQ969G6 155 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 TEAD3Q99594 435 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 APOL4Q9BPW4 351 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 HDHD2Q9H0R4 259 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 CDH20Q9HBT6 801 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 ATPIF1Q9UII2 106 aa12.45□□□□□ -0.42
VRK3-213ENST00000597215 A0A1W2PPR1 153 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 HS3ST1O14792 307 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 ZNF35P13682 527 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 CAPGP40121 348 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 RPS27P42677 84 aaKnown RBP12.44□□□□□ -0.42
VRK3-213ENST00000597215 GALK2Q01415 458 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 GGTLC2Q14390 218 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 CCDC92Q53HC0 331 aaPredicted RBP12.44□□□□□ -0.42
VRK3-213ENST00000597215 ELFN2Q5R3F8 820 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 SLC25A30Q5SVS4 291 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 MEDAGQ5VYS4 303 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 B3GLCTQ6Y288 498 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 CFAP77Q6ZQR2 320 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 AKAP1Q92667 903 aaKnown RBP eCLIP12.44□□□□□ -0.42
VRK3-213ENST00000597215 ZNF582Q96NG8 517 aaPredicted RBP12.44□□□□□ -0.42
VRK3-213ENST00000597215 ADI1Q9BV57 179 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 DNAJC27Q9NZQ0 273 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 SPEF1Q9Y4P9 236 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 ATP23Q9Y6H3 246 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 UNC79Q9P2D8 2635 aa12.44□□□□□ -0.42
VRK3-213ENST00000597215 ROS1P08922 2347 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 CENPEQ02224 2701 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 NBPF19A0A087WUL8 3843 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 C5orf49A4QMS7 147 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 OR6C6A6NF89 314 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 H0YAE9 185 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 H0YJX3 145 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 SYNGR3O43761 229 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 SELENOFO60613 162 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 HTR1FP30939 366 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 NAA10P41227 235 aaPredicted RBP12.43□□□□□ -0.42
VRK3-213ENST00000597215 ADARB1P78563 741 aaKnown RBP12.43□□□□□ -0.42
VRK3-213ENST00000597215 TMED1Q13445 227 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 OCLNQ16625 522 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 TMEM154Q6P9G4 183 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 DPY19L4Q7Z388 723 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 DCXRQ7Z4W1 244 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 ENTHD1Q8IYW4 607 aa12.43□□□□□ -0.42
VRK3-213ENST00000597215 ZNF454Q8N9F8 522 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms