RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 IDH3BO43837 385 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 TIPRLO75663 272 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 UBL3O95164 117 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 PPP1R3DO95685 299 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 GUCA1AP43080 201 aaPredicted RBP10.71□□□□□ -0.69
UPF1-203ENST00000594504 ARHGDIAP52565 204 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 CDH15P55291 814 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 LCN6P62502 163 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 COX10Q12887 443 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 ALKBH6Q3KRA9 238 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 LIPNQ5VXI9 398 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 TMEM179BQ7Z7N9 219 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 NSMAFQ92636 917 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 YIPF5Q969M3 257 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 FEVQ99581 238 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 EGLN3Q9H6Z9 239 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 SIAEQ9HAT2 523 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 IL20Q9NYY1 176 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 VSX1Q9NZR4 365 aaPredicted RBP10.71□□□□□ -0.69
UPF1-203ENST00000594504 PDP1Q9P0J1 537 aaPredicted RBP10.71□□□□□ -0.69
UPF1-203ENST00000594504 FBXL3Q9UKT7 428 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 UGT2A1Q9Y4X1 527 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 AP4S1Q9Y587 144 aa10.71□□□□□ -0.69
UPF1-203ENST00000594504 COL6A5A8TX70 2615 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 FAM157AC9JC47 383 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 HAX1O00165 279 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 SYNGR3O43761 229 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 RAB36O95755 333 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 NAT2P11245 290 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 FCGR1AP12314 374 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 CCL2P13500 99 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 FASP25445 335 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 NOS3P29474 1203 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 GLRXP35754 106 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 SRP14P37108 136 aaKnown RBP10.7□□□□□ -0.7
UPF1-203ENST00000594504 ACTR3P61158 418 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 ATP6AP1Q15904 470 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 SLC36A2Q495M3 483 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 CLEC12AQ5QGZ9 265 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 SHQ1Q6PI26 577 aaKnown RBP10.7□□□□□ -0.7
UPF1-203ENST00000594504 FOXL2NBQ6ZUU3 175 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 PTCHD4Q6ZW05 846 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 JAZF1Q86VZ6 243 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 ZNF584Q8IVC4 421 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 CLDND2Q8NHS1 167 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 HPS1Q92902 700 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 NABP1Q96AH0 204 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 NRBF2Q96F24 287 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 SH3GL3Q99963 347 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 NIPSNAP1Q9BPW8 284 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 PLA2G12AQ9BZM1 189 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 SYT4Q9H2B2 425 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 OR51B6Q9H340 312 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 ZNF556Q9HAH1 456 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 NTN4Q9HB63 628 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 LPAR2Q9HBW0 351 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 TBC1D23Q9NUY8 699 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 DUSP13Q9UII6 198 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 FBXO9Q9UK97 447 aaPredicted RBP10.7□□□□□ -0.7
UPF1-203ENST00000594504 FBN3Q75N90 2809 aa10.7□□□□□ -0.7
UPF1-203ENST00000594504 M0R233 179 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 BHLHE40O14503 412 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 TCF21O43680 179 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 SOX14O95416 240 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 CLPTM1O96005 669 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 ANXA8P13928 327 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 HIST1H1CP16403 213 aaKnown RBP10.69□□□□□ -0.7
UPF1-203ENST00000594504 CTLA4P16410 223 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 CDAP32320 146 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 CDKN2AP42771 156 aaKnown RBP10.69□□□□□ -0.7
UPF1-203ENST00000594504 GPR6P46095 362 aaPredicted RBP10.69□□□□□ -0.7
UPF1-203ENST00000594504 EVX1P49640 407 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 SGCAQ16586 387 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 FAM27BQ5VT28 67 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 TMEM53Q6P2H8 277 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 DNM1P34Q6PK57 102 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 SLC16A14Q7RTX9 510 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 HS3ST5Q8IZT8 346 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 PAQR4Q8N4S7 273 aaPredicted RBP10.69□□□□□ -0.7
UPF1-203ENST00000594504 OR8D4Q8NGM9 314 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 RAB3IPQ96QF0 476 aaPredicted RBP10.69□□□□□ -0.7
UPF1-203ENST00000594504 TSSK6Q9BXA6 273 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 KCNN2Q9H2S1 579 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 MS4A5Q9H3V2 200 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 TREM2Q9NZC2 230 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 BAIAP2Q9UQB8 552 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 SPEF1Q9Y4P9 236 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 SVEP1Q4LDE5 3571 aa10.69□□□□□ -0.7
UPF1-203ENST00000594504 A0A1W2PPL8 197 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 SLC16A7O60669 478 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 KHDRBS3O75525 346 aaKnown RBP10.68□□□□□ -0.7
UPF1-203ENST00000594504 NCR1O76036 304 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 RENP00797 406 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 FAM157BP0CG42 384 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 MSR1P21757 451 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 PRKACGP22612 351 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 CRABP1P29762 137 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 MAGEB1P43366 347 aa10.68□□□□□ -0.7
UPF1-203ENST00000594504 DVL1P1P54792 670 aaPredicted RBP10.68□□□□□ -0.7
UPF1-203ENST00000594504 ERVS71-1P61550 626 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms