RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 HMGN1P05114 100 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 LCKP06239 509 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 FAM157BP0CG42 384 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 ZNF823P16415 610 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 ZNF23P17027 643 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 DAPP51397 102 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 SLC25A1P53007 311 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 SELENOVP59797 346 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 CDK5Q00535 292 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 CRMP1Q14194 572 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 GINS1Q14691 196 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 RGS7BPQ6MZT1 257 aaPredicted RBP12.95□□□□□ -0.34
UPF1-202ENST00000594243 ZFP1Q6P2D0 407 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 FAHD1Q6P587 224 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 AMIGO2Q86SJ2 522 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 KRTAP1-3Q8IUG1 177 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 PAQR4Q8N4S7 273 aaPredicted RBP12.95□□□□□ -0.34
UPF1-202ENST00000594243 WFDC11Q8NEX6 87 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 PROKR2Q8NFJ6 384 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 SLC26A10Q8NG04 563 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 PYDC1Q8WXC3 89 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 CENPNQ96H22 339 aaPredicted RBP12.95□□□□□ -0.34
UPF1-202ENST00000594243 DOK1Q99704 481 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 ELOVL3Q9HB03 270 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 PLEK2Q9NYT0 353 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 GDF2Q9UK05 429 aaPredicted RBP12.95□□□□□ -0.34
UPF1-202ENST00000594243 MTORP42345 2549 aa12.95□□□□□ -0.34
UPF1-202ENST00000594243 TMEM129A0AVI4 362 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 DOK2O60496 412 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 TFP02787 698 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 CD99P14209 185 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 PAICSP22234 425 aaKnown RBP12.94□□□□□ -0.34
UPF1-202ENST00000594243 PPOXP50336 477 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 BLVRAP53004 296 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 MEP1BQ16820 701 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 ACSM5Q6NUN0 579 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.94□□□□□ -0.34
UPF1-202ENST00000594243 PARP8Q8N3A8 854 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 IQCF1Q8N6M8 205 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 OR1J1Q8NGS3 322 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 OR2AJ1Q8NGZ0 328 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 C4orf45Q96LM5 186 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 Q96MF0 132 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 VRK1Q99986 396 aaPredicted RBP12.94□□□□□ -0.34
UPF1-202ENST00000594243 MRPL37Q9BZE1 423 aaKnown RBP12.94□□□□□ -0.34
UPF1-202ENST00000594243 NMNAT2Q9BZQ4 307 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 SEMA6AQ9H2E6 1030 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 KRT84Q9NSB2 600 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 DUSP13Q9UII6 198 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 KCNG2Q9UJ96 466 aa12.94□□□□□ -0.34
UPF1-202ENST00000594243 MED13LQ71F56 2210 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 RER1O15258 196 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 SYNGR3O43761 229 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 NDUFS7O75251 213 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 F12P00748 615 aaPredicted RBP12.93□□□□□ -0.34
UPF1-202ENST00000594243 IGHV4-39P01824 125 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 ERCC1P07992 297 aaPredicted RBP12.93□□□□□ -0.34
UPF1-202ENST00000594243 SPI1P17947 270 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 FMO3P31513 532 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 PYCR1P32322 319 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 HTR5AP47898 357 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 NUDT6P53370 316 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 CRISP1P54107 249 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 ESRRGP62508 458 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 HIST1H3AP68431 136 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 MOGQ16653 247 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 CLEC12BQ2HXU8 276 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 CCDC92Q53HC0 331 aaPredicted RBP12.93□□□□□ -0.34
UPF1-202ENST00000594243 ELFN2Q5R3F8 820 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 HIST2H3PS2Q5TEC6 136 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 OTPQ5XKR4 325 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 HIST2H3AQ71DI3 136 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 VASH1Q7L8A9 365 aaPredicted RBP12.93□□□□□ -0.34
UPF1-202ENST00000594243 OR9Q1Q8NGQ5 310 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 OR1F12Q8NHA8 337 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 SYNPRQ8TBG9 265 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 TMUB1Q9BVT8 246 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 GABARAPL1Q9H0R8 117 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 RAB1BQ9H0U4 201 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 OR51B6Q9H340 312 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 MS4A5Q9H3V2 200 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 HEATR1Q9H583 2144 aaKnown RBP12.93□□□□□ -0.34
UPF1-202ENST00000594243 SLC25A19Q9HC21 320 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 ENOPH1Q9UHY7 261 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 ATPIF1Q9UII2 106 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 GPR160Q9UJ42 338 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 LHFPL6Q9Y693 200 aa12.93□□□□□ -0.34
UPF1-202ENST00000594243 SETD2Q9BYW2 2564 aaPredicted RBP12.93□□□□□ -0.34
UPF1-202ENST00000594243 C2CD3Q4AC94 2353 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 OR6C6A6NF89 314 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 PRR23D1E9PI22 279 aaPredicted RBP12.92□□□□□ -0.34
UPF1-202ENST00000594243 SURF4O15260 269 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 SSX4O60224 188 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 ICMTO60725 284 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 PRR23D2P0DMB1 279 aaPredicted RBP12.92□□□□□ -0.34
UPF1-202ENST00000594243 FOSL1P15407 271 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 ZNF250P15622 560 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 TUBG1P23258 451 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 WNT5AP41221 380 aa12.92□□□□□ -0.34
UPF1-202ENST00000594243 EFNA4P52798 201 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms