RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 IGHV3-64DA0A0J9YX35 117 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 EXOC1LA0A1B0GW35 172 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 F2RL2O00254 374 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 GLRA3O75311 464 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 IRF2P14316 349 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 BMXP51813 675 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 KLRD1Q13241 179 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 KCNJ8Q15842 424 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 KCTD18Q6PI47 426 aaPredicted RBP13.05□□□□□ -0.32
VPS53-218ENST00000575207 ARL9Q6T311 187 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 ZNF836Q6ZNA1 936 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 LRRC74BQ6ZQY2 392 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 PEX5LQ8IYB4 626 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 OR6X1Q8NH79 312 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 ZNF566Q969W8 418 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 HAVCR1Q96D42 359 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 C4orf45Q96LM5 186 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 ASPNQ9BXN1 380 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 KCNN2Q9H2S1 579 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 KLHL14Q9P2G3 628 aa13.05□□□□□ -0.32
VPS53-218ENST00000575207 ELOVL7A1L3X0 281 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 HMGN4O00479 90 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 ADAM20O43506 726 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 LYPLA1O75608 230 aaPredicted RBP13.04□□□□□ -0.32
VPS53-218ENST00000575207 SLC22A3O75751 556 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 LINC00032P0C843 101 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 ZNF32P17041 273 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 THBS3P49746 956 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 DLX1P56177 255 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 CNN3Q15417 329 aaKnown RBP13.04□□□□□ -0.32
VPS53-218ENST00000575207 FRMD7Q6ZUT3 714 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 CMTM4Q8IZR5 234 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 Q8N7P7 452 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 NPEPL1Q8NDH3 523 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 AKR7LQ8NHP1 331 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 Q8TCH9 128 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 LINC00476Q8WZB0 136 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 CMBLQ96DG6 245 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 ONECUT1Q9UBC0 465 aa13.04□□□□□ -0.32
VPS53-218ENST00000575207 NDUFA2O43678 99 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 ALDOBP05062 364 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 VDAC2P45880 294 aaPredicted RBP13.03□□□□□ -0.32
VPS53-218ENST00000575207 SERPINB9P50453 376 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 ZNF84P51523 738 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 MRPS25P82663 173 aaKnown RBP13.03□□□□□ -0.32
VPS53-218ENST00000575207 LIN52Q52LA3 116 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 Q6ZS46 218 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 OR4A15Q8NGL6 344 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 POFUT1Q9H488 388 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 TUBB1Q9H4B7 451 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 DNAJB11Q9UBS4 358 aa13.03□□□□□ -0.32
VPS53-218ENST00000575207 PKHD1P08F94 4074 aa13.02□□□□□ -0.32
VPS53-218ENST00000575207 IGKV1D-42A0A075B6H8 117 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 TRBV23-1A0A0A0MS06 115 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 DVL1O14640 695 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 PRPS1L1P21108 318 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 NAA20P61599 178 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 PSG4Q00888 419 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 PGS1Q32NB8 556 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 TMEM95Q3KNT9 176 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 RNF165Q6ZSG1 346 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 SERPINA11Q86U17 422 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 RIMKLAQ8IXN7 391 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 SPC24Q8NBT2 197 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 OR51D1Q8NGF3 324 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 OR6S1Q8NH40 331 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 SLC25A44Q96H78 314 aaPredicted RBP13.02□□□□□ -0.33
VPS53-218ENST00000575207 ERP44Q9BS26 406 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 NANSQ9NR45 359 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 MRPL39Q9NYK5 338 aaKnown RBP13.02□□□□□ -0.33
VPS53-218ENST00000575207 FIS1Q9Y3D6 152 aa13.02□□□□□ -0.33
VPS53-218ENST00000575207 NKX6-3A6NJ46 265 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 PLPP3O14495 311 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 HDAC3O15379 428 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 SLC25A17O43808 307 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 SASH3O75995 380 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 ERFP50548 548 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 PLTPP55058 493 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 CLEC12AQ5QGZ9 265 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 RNF220Q5VTB9 566 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 SLC35D2Q76EJ3 337 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 OR13G1Q8NGZ3 307 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 OR52P1PQ8NH57 321 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 ERGIC1Q969X5 290 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 TM2D3Q9BRN9 247 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 SIAEQ9HAT2 523 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 C12orf10Q9HB07 376 aa13.01□□□□□ -0.33
VPS53-218ENST00000575207 MARCOQ9UEW3 520 aaPredicted RBP13.01□□□□□ -0.33
VPS53-218ENST00000575207 LGALS8O00214 317 aa13□□□□□ -0.33
VPS53-218ENST00000575207 RNASET2O00584 256 aaKnown RBP13□□□□□ -0.33
VPS53-218ENST00000575207 ABHD16AO95870 558 aa13□□□□□ -0.33
VPS53-218ENST00000575207 BGLAPP02818 100 aa13□□□□□ -0.33
VPS53-218ENST00000575207 PGA4P0DJD7 388 aa13□□□□□ -0.33
VPS53-218ENST00000575207 PGA3P0DJD8 388 aa13□□□□□ -0.33
VPS53-218ENST00000575207 PHBP35232 272 aa13□□□□□ -0.33
VPS53-218ENST00000575207 CHI3L1P36222 383 aaPredicted RBP13□□□□□ -0.33
VPS53-218ENST00000575207 ECI1P42126 302 aa13□□□□□ -0.33
VPS53-218ENST00000575207 GP2P55259 537 aaKnown RBP13□□□□□ -0.33
VPS53-218ENST00000575207 IL5RAQ01344 420 aa13□□□□□ -0.33
VPS53-218ENST00000575207 GUCY1A3Q02108 690 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms