RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 C11orf40Q8WZ69 217 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 UTP4Q969X6 686 aaKnown RBP11.21□□□□□ -0.61
CLK3-224ENST00000568605 MRPL24Q96A35 216 aaKnown RBP11.21□□□□□ -0.61
CLK3-224ENST00000568605 PLEKHA8Q96JA3 519 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 FOXN4Q96NZ1 517 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 TSSK2Q96PF2 358 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 HDHD2Q9H0R4 259 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 ELOVL3Q9HB03 270 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 PAPOLBQ9NRJ5 636 aaKnown RBP11.21□□□□□ -0.61
CLK3-224ENST00000568605 CMC2Q9NRP2 79 aa11.21□□□□□ -0.61
CLK3-224ENST00000568605 YLPM1P49750 1951 aaKnown RBP11.21□□□□□ -0.62
CLK3-224ENST00000568605 HIVEP1P15822 2718 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 A0A1W2PPW3 197 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 C5orf49A4QMS7 147 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 H3BSA7 217 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 DCTN6O00399 190 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 GPRIN2O60269 458 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 IGHV4-39P01824 125 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 TP53P04637 393 aaPredicted RBP11.2□□□□□ -0.62
CLK3-224ENST00000568605 HMGN1P05114 100 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 CSF3P09919 207 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 CCL2P13500 99 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 CD99P14209 185 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 POU1F1P28069 291 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 TEKQ02763 1124 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 CRMP1Q14194 572 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 ZNF774Q6NX45 483 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 UGT2A3Q6UWM9 527 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.2□□□□□ -0.62
CLK3-224ENST00000568605 KRTAP1-3Q8IUG1 177 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 HS3ST5Q8IZT8 346 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 PARP8Q8N3A8 854 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 CYB561A3Q8NBI2 242 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 SLC37A3Q8NCC5 494 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 ICA1LQ8NDH6 482 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 OR2AJ1Q8NGZ0 328 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 SNX33Q8WV41 574 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 IPCEF1Q8WWN9 437 aaPredicted RBP11.2□□□□□ -0.62
CLK3-224ENST00000568605 POM121L2Q96KW2 1035 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 Q96MF0 132 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 VRK1Q99986 396 aaPredicted RBP11.2□□□□□ -0.62
CLK3-224ENST00000568605 RBM4Q9BWF3 364 aaKnown RBP11.2□□□□□ -0.62
CLK3-224ENST00000568605 CDADC1Q9BWV3 514 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 RAB1BQ9H0U4 201 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 WNT5BQ9H1J7 359 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 OR51B6Q9H340 312 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 NTN4Q9HB63 628 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 MYOZ1Q9NP98 299 aaPredicted RBP11.2□□□□□ -0.62
CLK3-224ENST00000568605 KRT84Q9NSB2 600 aa11.2□□□□□ -0.62
CLK3-224ENST00000568605 OR6C6A6NF89 314 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 SYNGR3O43761 229 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 ICMTO60725 284 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 ABHD16AO95870 558 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 MT-ND5P03915 603 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 GCH1P30793 250 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 FMO3P31513 532 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 EFNA4P52798 201 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 SLC25A1P53007 311 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 UCP2P55851 309 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 KLF3P57682 345 aaPredicted RBP11.19□□□□□ -0.62
CLK3-224ENST00000568605 DSCR9P59020 149 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 MOGQ16653 247 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 CLEC12BQ2HXU8 276 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 FAHD1Q6P587 224 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 CLEC2AQ6UVW9 174 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 VASH1Q7L8A9 365 aaPredicted RBP11.19□□□□□ -0.62
CLK3-224ENST00000568605 PAQR4Q8N4S7 273 aaPredicted RBP11.19□□□□□ -0.62
CLK3-224ENST00000568605 OR1J1Q8NGS3 322 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 OR6K6Q8NGW6 343 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 ABHD4Q8TB40 342 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 SYNPRQ8TBG9 265 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 CENPNQ96H22 339 aaPredicted RBP11.19□□□□□ -0.62
CLK3-224ENST00000568605 COG8Q96MW5 612 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 DCLRE1CQ96SD1 692 aaKnown RBP11.19□□□□□ -0.62
CLK3-224ENST00000568605 OSBPL10Q9BXB5 764 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 GABARAPL1Q9H0R8 117 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 MS4A5Q9H3V2 200 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.19□□□□□ -0.62
CLK3-224ENST00000568605 REV1Q9UBZ9 1251 aa11.19□□□□□ -0.62
CLK3-224ENST00000568605 GDF2Q9UK05 429 aaPredicted RBP11.19□□□□□ -0.62
CLK3-224ENST00000568605 LOC100509620A0A075B734 347 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 PRR23D1E9PI22 279 aaPredicted RBP11.18□□□□□ -0.62
CLK3-224ENST00000568605 J3QW42 95 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 SSX4O60224 188 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 MPZL1O95297 269 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 SCG5P05408 212 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 IGFBP1P08833 259 aaPredicted RBP11.18□□□□□ -0.62
CLK3-224ENST00000568605 PRR23D2P0DMB1 279 aaPredicted RBP11.18□□□□□ -0.62
CLK3-224ENST00000568605 FOSL1P15407 271 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 SPI1P17947 270 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 PRKACGP22612 351 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 TUBG1P23258 451 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 PYCR1P32322 319 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 RGS6P49758 472 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 ESRRGP62508 458 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 ECH1Q13011 328 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 GINS1Q14691 196 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 KPNB1Q14974 876 aaKnown RBP11.18□□□□□ -0.62
CLK3-224ENST00000568605 MEP1BQ16820 701 aa11.18□□□□□ -0.62
CLK3-224ENST00000568605 NKPD1Q17RQ9 610 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms