RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ZNF627Q7L945 461 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 JAZF1Q86VZ6 243 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 LINC00346Q8IVM7 164 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 SLC37A3Q8NCC5 494 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 NPEPL1Q8NDH3 523 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 GTF3AQ92664 365 aaKnown RBP11.95□□□□□ -0.5
CLN3-235ENST00000568497 OTULINQ96BN8 352 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 BOD1Q96IK1 185 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 PKP2Q99959 881 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 KCNS3Q9BQ31 491 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 CACNG6Q9BXT2 260 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 DGCR6LQ9BY27 220 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 VSX1Q9NZR4 365 aaPredicted RBP11.95□□□□□ -0.5
CLN3-235ENST00000568497 MYEF2Q9P2K5 600 aaKnown RBP11.95□□□□□ -0.5
CLN3-235ENST00000568497 DNAJB9Q9UBS3 223 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 B9D1Q9UPM9 204 aa11.95□□□□□ -0.5
CLN3-235ENST00000568497 LOC100509620A0A075B734 347 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 IGLV1-36A0A0B4J1U3 117 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 A0A0G2JK05 382 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 H3BN98 237 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 H3BNX3 289 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 KHDRBS3O75525 346 aaKnown RBP11.94□□□□□ -0.5
CLN3-235ENST00000568497 UBL3O95164 117 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 TXNDC12O95881 172 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 CRYAAP02489 173 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 OR4A8P0C604 315 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 EPHA2P29317 976 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 TTKP33981 857 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 ARR3P36575 388 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 ACTG1P63261 375 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 MRPS34P82930 218 aaKnown RBP11.94□□□□□ -0.5
CLN3-235ENST00000568497 HSF2Q03933 536 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 GLO1Q04760 184 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 CRMP1Q14194 572 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 MAD2L1BPQ15013 274 aaPredicted RBP11.94□□□□□ -0.5
CLN3-235ENST00000568497 TAF11Q15544 211 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 SPATA46Q5T0L3 261 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 GPR139Q6DWJ6 353 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 TMEM154Q6P9G4 183 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 SVOPLQ8N434 492 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 ZNF525Q8N782 197 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 ATG16L2Q8NAA4 619 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 FAM168AQ92567 244 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 DHRS9Q9BPW9 319 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 SYT3Q9BQG1 590 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 POFUT1Q9H488 388 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 SIAEQ9HAT2 523 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 CCNB1IP1Q9NPC3 277 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 OBP2BQ9NPH6 170 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 CA10Q9NS85 328 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 MGAT4BQ9UQ53 548 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 AP4S1Q9Y587 144 aa11.94□□□□□ -0.5
CLN3-235ENST00000568497 ENTPD5O75356 428 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 FARS2O95363 451 aaKnown RBP11.93□□□□□ -0.5
CLN3-235ENST00000568497 TFP02787 698 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 DBHP09172 617 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 GAAP10253 952 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 ZNF35P13682 527 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 USF1P22415 310 aaPredicted RBP11.93□□□□□ -0.5
CLN3-235ENST00000568497 ANOS1P23352 680 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 POLR2IP36954 125 aaKnown RBP11.93□□□□□ -0.5
CLN3-235ENST00000568497 WNT5AP41221 380 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 PRSS12P56730 875 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 DEFA6Q01524 100 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 GINS1Q14691 196 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 ADIPOQQ15848 244 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 ATP6AP1Q15904 470 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 ANKDD1AQ495B1 522 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 TMEM255AQ5JRV8 349 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 FAM205BPQ63HN1 556 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 C11orf71Q6IPW1 123 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 TMEM53Q6P2H8 277 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 FOXL2NBQ6ZUU3 175 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 HDDC2Q7Z4H3 204 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 DTX2Q86UW9 622 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 MUC15Q8N387 334 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 SLC30A7Q8NEW0 376 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 OR52L1Q8NGH7 329 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 DDOQ99489 341 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 OR2H1Q9GZK4 316 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 IL20Q9NYY1 176 aa11.93□□□□□ -0.5
CLN3-235ENST00000568497 TMEM129A0AVI4 362 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 CENPBD1B2RD01 187 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 RER1O15258 196 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 CLPTM1O96005 669 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 RENP00797 406 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 SERPINA5P05154 406 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 HOXB1P14653 301 aaPredicted RBP11.92□□□□□ -0.5
CLN3-235ENST00000568497 MSR1P21757 451 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 DAG1Q14118 895 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 SLC36A2Q495M3 483 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 FAM27BQ5VT28 67 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 SHQ1Q6PI26 577 aaKnown RBP11.92□□□□□ -0.5
CLN3-235ENST00000568497 SPATC1Q76KD6 591 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 BCDIN3DQ7Z5W3 292 aaKnown RBP11.92□□□□□ -0.5
CLN3-235ENST00000568497 FBXL14Q8N1E6 418 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 DEPDC4Q8N2C3 294 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 ZNF511Q8NB15 262 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 BBS1Q8NFJ9 593 aa11.92□□□□□ -0.5
CLN3-235ENST00000568497 MRPL37Q9BZE1 423 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms