RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DYNC1I1O14576 645 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 PSTPIP1O43586 416 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 CD74P04233 296 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 KITLGP21583 273 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 AQP2P41181 271 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 SSR1P43307 286 aaKnown RBP1.15□□□□□ -2.23
VPS35-207ENST00000568191 MXD1Q05195 221 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 MEF2CQ06413 473 aaPredicted RBP1.15□□□□□ -2.23
VPS35-207ENST00000568191 IL24Q13007 206 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 METTL21CQ5VZV1 264 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 KDELC1Q6UW63 502 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 CASP12Q6UXS9 341 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 CCDC73Q6ZRK6 1079 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 Q6ZSR3 168 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 TBC1D21Q8IYX1 336 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 ZNF664Q8N3J9 261 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 ZNF680Q8NEM1 530 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 C1orf64Q8NEQ6 169 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 OR2L3Q8NG85 312 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 OR6N1Q8NGY5 312 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 OR10J6PQ8NGY7 276 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 OR5B3Q8NH48 314 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 PLPPR1Q8TBJ4 325 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 STMN2Q93045 179 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 SLC25A46Q96AG3 418 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 FLYWCH2Q96CP2 140 aaKnown RBP1.15□□□□□ -2.23
VPS35-207ENST00000568191 DUS3LQ96G46 650 aaKnown RBP1.15□□□□□ -2.23
VPS35-207ENST00000568191 COL21A1Q96P44 957 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 SH3GL1Q99961 368 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 KRTAP4-1Q9BYQ7 146 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 OR52D1Q9H346 318 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 C1orf198Q9H425 327 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 RABL2AQ9UBK7 228 aaPredicted RBP1.15□□□□□ -2.23
VPS35-207ENST00000568191 LSM7Q9UK45 103 aaKnown RBP1.15□□□□□ -2.23
VPS35-207ENST00000568191 HYOU1Q9Y4L1 999 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 PEX16Q9Y5Y5 336 aa1.15□□□□□ -2.23
VPS35-207ENST00000568191 ARPC4-TTLL3A0A0A6YYG9 625 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 IGLV1-36A0A0B4J1U3 117 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 ARHGEF35A5YM69 484 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 ZNF98A6NK75 572 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 ZNF716A6NP11 495 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 SPAG6O75602 509 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 DEDDO75618 318 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 SNX4O95219 450 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 CLIC3O95833 236 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 C2P06681 752 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 OR5H8P0DN80 308 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 DBTP11182 482 aaKnown RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 LGALS3P17931 250 aaKnown RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 WARSP23381 471 aaKnown RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 GLRA2P23416 452 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 LOXP28300 417 aaPredicted RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 EPS15P42566 896 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 CCNG1P51959 295 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 ARFIP1P53367 373 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 SLC25A11Q02978 314 aaKnown RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 LRRC74AQ0VAA2 488 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 PDK3Q15120 406 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 ANKRD22Q5VYY1 191 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 LRRC74BQ6ZQY2 392 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 H2BFWTQ7Z2G1 175 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 EFL1Q7Z2Z2 1120 aaKnown RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 PPP1R42Q7Z4L9 355 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 WDFY1Q8IWB7 410 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 ST20-AS1Q8NBB2 130 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 FBXL13Q8NEE6 735 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 OR10AD1Q8NGE0 317 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 SHC3Q92529 594 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 TRIM44Q96DX7 344 aaPredicted RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 CFAP53Q96M91 514 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 OR5B12Q96R08 314 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 NEUROG2Q9H2A3 272 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 ING4Q9UNL4 249 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 MRPS7Q9Y2R9 242 aaKnown RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 NPTNQ9Y639 398 aa1.14□□□□□ -2.23
VPS35-207ENST00000568191 FCGBPQ9Y6R7 5405 aaPredicted RBP1.14□□□□□ -2.23
VPS35-207ENST00000568191 SCN4AP35499 1836 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 C15orf38-AP3S2A0A0A6YYH1 394 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 GPR89AB7ZAQ6 455 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 H0YJW9 148 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 GOLGA8SH3BPF8 625 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 POLR1CO15160 346 aaPredicted RBP1.13□□□□□ -2.23
VPS35-207ENST00000568191 SURF6O75683 361 aaKnown RBP1.13□□□□□ -2.23
VPS35-207ENST00000568191 CLPXO76031 633 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 TSPAN13O95857 204 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 HLA-DQB1P01920 261 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 CRYGBP07316 175 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 OR8U9P0C7N5 309 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 ZNF688P0C7X2 276 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 GPR89BP0CG08 455 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 SFTPCP11686 197 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 ZNF250P15622 560 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 CASQ1P31415 396 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 SSTR5P35346 364 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 CEACAM3P40198 252 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 PRPHP41219 470 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 HNMTP50135 292 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 FUT5Q11128 374 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 ECH1Q13011 328 aa1.13□□□□□ -2.23
VPS35-207ENST00000568191 CHIT1Q13231 466 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms