RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 PSG7Q13046 419 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 HNRNPA0Q13151 305 aaKnown RBP12.61□□□□□ -0.39
CLN3-228ENST00000567804 CDK5R2Q13319 367 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 FHL1Q13642 323 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 AWAT1Q58HT5 328 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 CPLX4Q7Z7G2 160 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 NRMQ8IXM6 262 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 MICU2Q8IYU8 434 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 OFCC1Q8IZS5 231 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 OR51A7Q8NH64 312 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 SGMS2Q8NHU3 365 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 RP9Q8TA86 221 aaKnown RBP12.61□□□□□ -0.39
CLN3-228ENST00000567804 C22orf15Q8WYQ4 148 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 POLE4Q9NR33 117 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 MAN2C1Q9NTJ4 1040 aa12.61□□□□□ -0.39
CLN3-228ENST00000567804 NDRG4Q9ULP0 352 aaKnown RBP12.61□□□□□ -0.39
CLN3-228ENST00000567804 MGAM2Q2M2H8 2515 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 C12orf71A8MTZ7 269 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 H7C1C5 153 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 WIPF1O43516 503 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 ABHD16AO95870 558 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 SCG5P05408 212 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 COX5BP10606 129 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 FPR2P25090 351 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 IFNA8P32881 189 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 LCN6P62502 163 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 UBA52P62987 128 aaKnown RBP12.6□□□□□ -0.39
CLN3-228ENST00000567804 PRKCDQ05655 676 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 TUSC1Q2TAM9 212 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 ANKDD1AQ495B1 522 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 ARL9Q6T311 187 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 ZER1Q7Z7L7 766 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 PCYOX1LQ8NBM8 494 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 NPEPL1Q8NDH3 523 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 DEFB108BQ8NET1 73 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 OR2T12Q8NG77 320 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 DVL3Q92997 716 aaPredicted RBP12.6□□□□□ -0.39
CLN3-228ENST00000567804 WACQ9BTA9 647 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 NSRP1Q9H0G5 558 aaKnown RBP12.6□□□□□ -0.39
CLN3-228ENST00000567804 POFUT1Q9H488 388 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 NTN4Q9HB63 628 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 TBCCD1Q9NVR7 557 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 CMTM6Q9NX76 183 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 RHCGQ9UBD6 479 aa12.6□□□□□ -0.39
CLN3-228ENST00000567804 EFCAB9A8MZ26 197 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 J3KTA2 159 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 DOK2O60496 412 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 SBK2P0C263 348 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 GSTM3P21266 225 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 YAP1P46937 504 aaKnown RBP12.59□□□□□ -0.39
CLN3-228ENST00000567804 HTR5AP47898 357 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 SLC9A3P48764 834 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 SCRN3Q0VDG4 424 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 PIGWQ7Z7B1 504 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 OAFQ86UD1 273 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 SPICQ8N5J4 248 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 ZNF283Q8N7M2 679 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 OR13C2Q8NGS9 318 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 POP5Q969H6 163 aaKnown RBP12.59□□□□□ -0.39
CLN3-228ENST00000567804 DCLRE1CQ96SD1 692 aaKnown RBP12.59□□□□□ -0.39
CLN3-228ENST00000567804 PATZ1Q9HBE1 687 aaKnown RBP12.59□□□□□ -0.39
CLN3-228ENST00000567804 EMC7Q9NPA0 242 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 MMP26Q9NRE1 261 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 DDX28Q9NUL7 540 aaKnown RBP12.59□□□□□ -0.39
CLN3-228ENST00000567804 TMEM106BQ9NUM4 274 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 GID8Q9NWU2 228 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 FAM53CQ9NYF3 392 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 PURGQ9UJV8 347 aaKnown RBP12.59□□□□□ -0.39
CLN3-228ENST00000567804 POLR3KQ9Y2Y1 108 aaPredicted RBP12.59□□□□□ -0.39
CLN3-228ENST00000567804 PPIAL4AQ9Y536 164 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 SNX13Q9Y5W8 968 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 PKD1L1Q8TDX9 2849 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 TRRAPQ9Y4A5 3859 aa12.59□□□□□ -0.39
CLN3-228ENST00000567804 ELOVL7A1L3X0 281 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 FFAR1O14842 300 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 IFNW1P05000 195 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 TNFRSF1AP19438 455 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 KITLGP21583 273 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 TUBG1P23258 451 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 TNFSF4P23510 183 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 RBMXP38159 391 aaKnown RBP12.58□□□□□ -0.4
CLN3-228ENST00000567804 TRAM2Q15035 370 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 TMEM155Q4W5P6 130 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 C8orf82Q6P1X6 216 aaPredicted RBP12.58□□□□□ -0.4
CLN3-228ENST00000567804 Q6ZR03 302 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 VTCN1Q7Z7D3 282 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 SLC15A3Q8IY34 581 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 KLHL36Q8N4N3 616 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 FAM156AQ8NDB6 213 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 OR2Z1Q8NG97 314 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 LZICQ8WZA0 190 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 SAMD8Q96LT4 415 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 SIGLEC11Q96RL6 698 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 FNDC11Q9BVV2 318 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 TUBG2Q9NRH3 451 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 EGFL7Q9UHF1 273 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 ADAM18Q9Y3Q7 739 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 MEGF8Q7Z7M0 2845 aa12.58□□□□□ -0.4
CLN3-228ENST00000567804 A0A087WUU8 490 aa12.57□□□□□ -0.4
CLN3-228ENST00000567804 A8MXK9 166 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms