RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 RNF212BA8MTL3 300 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 SPRY3O43610 288 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 MPZL1O95297 269 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 FABP3P05413 133 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 CRYBB2P43320 205 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 CENPAP49450 140 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 CDH15P55291 814 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 FXYD6P3P58550 94 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 MBNL2Q5VZF2 373 aaKnown RBP17.68■□□□□ 0.42
CLN3-219ENST00000565778 ZER1Q7Z7L7 766 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 GLB1L2Q8IW92 636 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 IPCEF1Q8WWN9 437 aaPredicted RBP17.68■□□□□ 0.42
CLN3-219ENST00000565778 ERMAPQ96PL5 475 aaPredicted RBP17.68■□□□□ 0.42
CLN3-219ENST00000565778 NUAK2Q9H093 628 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 VSX1Q9NZR4 365 aaPredicted RBP17.68■□□□□ 0.42
CLN3-219ENST00000565778 TMEFF2Q9UIK5 374 aaPredicted RBP17.68■□□□□ 0.42
CLN3-219ENST00000565778 TMCC3Q9ULS5 477 aa17.68■□□□□ 0.42
CLN3-219ENST00000565778 IGHV1-69-2A0A0G2JMI3 117 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 IMPA2O14732 288 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 SGCEO43556 437 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 OR10H3O60404 316 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 RP2O75695 350 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 ABHD16AO95870 558 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 SEMG1P04279 462 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 COX5BP10606 129 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 IFNGR2P38484 337 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 CDKN2AP42771 156 aaKnown RBP17.67■□□□□ 0.42
CLN3-219ENST00000565778 HTR5AP47898 357 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 MNAT1P51948 309 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 OTPQ5XKR4 325 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 RFPL4BQ6ZWI9 263 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 USP51Q70EK9 711 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 ADCK1Q86TW2 530 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 C1orf159Q96HA4 380 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 PLEK2Q9NYT0 353 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 TREM2Q9NZC2 230 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 GRIP1Q9Y3R0 1128 aa17.67■□□□□ 0.42
CLN3-219ENST00000565778 MALRD1Q5VYJ5 2156 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 B4DSR2 109 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 WNT9BO14905 357 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 DOK2O60496 412 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 PPP1R3DO95685 299 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 TXNDC12O95881 172 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 RRM2P31350 389 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 LIPAP38571 399 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 MMP15P51511 669 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 LSM6P62312 80 aaKnown RBP17.66■□□□□ 0.42
CLN3-219ENST00000565778 MVKQ03426 396 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 AQP6Q13520 282 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 RFX4Q33E94 735 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 SPATS1Q496A3 300 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 PTCHD4Q6ZW05 846 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 ZDHHC21Q8IVQ6 265 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 SPATA3Q8NHX4 192 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 TMEM158Q8WZ71 300 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 RACGAP1Q9H0H5 632 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 SAP30LQ9HAJ7 183 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 SRA1Q9HD15 236 aaKnown RBP17.66■□□□□ 0.42
CLN3-219ENST00000565778 IL1RAPQ9NPH3 570 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 CYSLTR2Q9NS75 346 aa17.66■□□□□ 0.42
CLN3-219ENST00000565778 B2RBV5 119 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 PHF1O43189 567 aaPredicted RBP17.65■□□□□ 0.42
CLN3-219ENST00000565778 ICMTO60725 284 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 IGHV1-46P01743 117 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 TFP02787 698 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 CRABP1P29762 137 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 SLC6A6P31641 620 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 HFEQ30201 348 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 FAM209AQ5JX71 171 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 DNM1P34Q6PK57 102 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 VASH1Q7L8A9 365 aaPredicted RBP17.65■□□□□ 0.42
CLN3-219ENST00000565778 FANK1Q8TC84 345 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 GNPDA2Q8TDQ7 276 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 TSSK2Q96PF2 358 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 CCT8L2Q96SF2 557 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 IFT27Q9BW83 186 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 EGLN1Q9GZT9 426 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 OR52D1Q9H346 318 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 TBCCD1Q9NVR7 557 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 ASH2LQ9UBL3 628 aa17.65■□□□□ 0.42
CLN3-219ENST00000565778 H3BSA7 217 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 TIMM8AO60220 97 aaPredicted RBP17.64■□□□□ 0.41
CLN3-219ENST00000565778 GSTM3P21266 225 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 NOS3P29474 1203 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 DVL1P1P54792 670 aaPredicted RBP17.64■□□□□ 0.41
CLN3-219ENST00000565778 TMEM255AQ5JRV8 349 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 AVPI1Q5T686 147 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 C1orf94Q6P1W5 598 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 LEG1Q6P5S2 330 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 CYP2R1Q6VVX0 501 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.64■□□□□ 0.41
CLN3-219ENST00000565778 JAZF1Q86VZ6 243 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 FITM2Q8N6M3 262 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 CCL17Q92583 94 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 ELMOD3Q96FG2 381 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 NSL1Q96IY1 281 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 SAMD8Q96LT4 415 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 LPAR2Q9HBW0 351 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 KLHL21Q9UJP4 597 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 ZDHHC8Q9ULC8 765 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms