RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CDC42EP2O14613 210 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 TIMM8AO60220 97 aaPredicted RBP9.83□□□□□ -0.84
USP3-220ENST00000561381 ABHD16AO95870 558 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 CD55P08174 381 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 ADH4P08319 380 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 SBK2P0C263 348 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 TROVE2P10155 538 aaKnown RBP eCLIP9.83□□□□□ -0.84
USP3-220ENST00000561381 H2AFXP16104 143 aaPredicted RBP9.83□□□□□ -0.84
USP3-220ENST00000561381 MSR1P21757 451 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 GPR4P46093 362 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 COMPP49747 757 aaPredicted RBP9.83□□□□□ -0.84
USP3-220ENST00000561381 RAP1BP61224 184 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 PCBD1P61457 104 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 RAP1AP62834 184 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 TNFAIP6P98066 277 aaPredicted RBP9.83□□□□□ -0.84
USP3-220ENST00000561381 PRKCDQ05655 676 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 TRAM2Q15035 370 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 MAPRE2Q15555 327 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 MTX3Q5HYI7 312 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 FAM205BPQ63HN1 556 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 UNQ6126/PRO20091Q6UXV3 157 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 Q6ZR03 302 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 OFCC1Q8IZS5 231 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 PCYOX1LQ8NBM8 494 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 NANPQ8TBE9 248 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 DCLRE1CQ96SD1 692 aaKnown RBP9.83□□□□□ -0.84
USP3-220ENST00000561381 FNDC11Q9BVV2 318 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 EGLN1Q9GZT9 426 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 ELOVL3Q9HB03 270 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 MMP26Q9NRE1 261 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 CYSLTR2Q9NS75 346 aa9.83□□□□□ -0.84
USP3-220ENST00000561381 TENM1Q9UKZ4 2725 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 A0A087WUU8 490 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 C12orf71A8MTZ7 269 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 H3BSA7 217 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 TRIM77I1YAP6 450 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 IMPA2O14732 288 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 DOK2O60496 412 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 PRSS23O95084 383 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 ZNF682O95780 498 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 FSHBP01225 129 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 IGHV2-70P01814 119 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 IFNW1P05000 195 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 IFNA8P32881 189 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 LIPAP38571 399 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 GUCA1AP43080 201 aaPredicted RBP9.82□□□□□ -0.84
USP3-220ENST00000561381 HTR5AP47898 357 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 SLC9A3P48764 834 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 ERFP50548 548 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 ARHGDIAP52565 204 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 SLC3A1Q07837 685 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 CDK5R2Q13319 367 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 MESTQ5EB52 335 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 ZNF730Q6ZMV8 503 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 SLC15A3Q8IY34 581 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 TEX29Q8N6K0 151 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 ZDHHC22Q8N966 263 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 FNDC8Q8TC99 324 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 LZICQ8WZA0 190 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 SLC7A6Q92536 515 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 Q96M85 177 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 RBM4Q9BWF3 364 aaKnown RBP9.82□□□□□ -0.84
USP3-220ENST00000561381 SUCNR1Q9BXA5 334 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 PURGQ9UJV8 347 aaKnown RBP9.82□□□□□ -0.84
USP3-220ENST00000561381 ZDHHC8Q9ULC8 765 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 STARD10Q9Y365 291 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 NPTNQ9Y639 398 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 CAPN7Q9Y6W3 813 aa9.82□□□□□ -0.84
USP3-220ENST00000561381 HTR3EA5X5Y0 456 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 CD14P08571 375 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 CTLA4P16410 223 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 EGR1P18146 543 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 GATA3P23771 443 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 RPL4P36578 427 aaKnown RBP9.81□□□□□ -0.84
USP3-220ENST00000561381 SEC61A1P61619 476 aaKnown RBP9.81□□□□□ -0.84
USP3-220ENST00000561381 LIPEQ05469 1076 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 FAM122BQ7Z309 247 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 TSEN54Q7Z6J9 526 aaKnown RBP9.81□□□□□ -0.84
USP3-220ENST00000561381 SYT9Q86SS6 491 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 C1orf174Q8IYL3 243 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 BPIFB2Q8N4F0 458 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 C3orf56Q8N813 242 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 OR2Z1Q8NG97 314 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 ST7LQ8TDW4 575 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 ACOT11Q8WXI4 607 aaPredicted RBP9.81□□□□□ -0.84
USP3-220ENST00000561381 DVL3Q92997 716 aaPredicted RBP9.81□□□□□ -0.84
USP3-220ENST00000561381 RASD2Q96D21 266 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 CMBLQ96DG6 245 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 HSH2DQ96JZ2 352 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 DIRC2Q96SL1 478 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 TMEM106BQ9NUM4 274 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 MRGBPQ9NV56 204 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 TBCCD1Q9NVR7 557 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 GRHPRQ9UBQ7 328 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 CGGBP1Q9UFW8 167 aaPredicted RBP9.81□□□□□ -0.84
USP3-220ENST00000561381 EGFL7Q9UHF1 273 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 NDRG4Q9ULP0 352 aaKnown RBP9.81□□□□□ -0.84
USP3-220ENST00000561381 PPIAL4AQ9Y536 164 aa9.81□□□□□ -0.84
USP3-220ENST00000561381 TEX13CA0A0J9YWL9 993 aa9.8□□□□□ -0.84
USP3-220ENST00000561381 PRSS37A4D1T9 235 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms