RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 NPIPA7E9PJI5 369 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 H7C417 338 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 J3QLW9 94 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 IMPA2O14732 288 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ARPC1BO15143 372 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 LATO43561 262 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 FGF17O60258 216 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CREBL2O60519 120 aaPredicted RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 GMDSO60547 372 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 SELENOFO60613 162 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CTSVO60911 334 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CTNSO60931 367 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 UPK3AO75631 287 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 GLCEO94923 617 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 GLSO94925 669 aaPredicted RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 TXNDC12O95881 172 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 TIMP1P01033 207 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 EGFP01133 1207 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 IFNA16P05015 189 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 GYPBP06028 91 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 HOXD4P09016 255 aaPredicted RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 CT62P0C5K7 136 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ANKRD34CP0C6C1 535 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 GKN3PP0CG01 181 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 NPIPA8P0DM63 369 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CD37P11049 281 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 LAMP2P13473 410 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CCL5P13501 91 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 GABRA1P14867 456 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CSF2RAP15509 400 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ZNF250P15622 560 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 RPA2P15927 270 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 HIST1H1CP16403 213 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 ZNF19P17023 458 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 SPI1P17947 270 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ADRA2CP18825 462 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CXCL2P19875 107 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 S1PR1P21453 382 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 PRKACBP22694 351 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CDK2P24941 298 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 EDNRAP25101 427 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 SSTR2P30874 369 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 MAT2AP31153 395 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 CA8P35219 290 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CTNNB1P35222 781 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ATP6V1E1P36543 226 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ACVR1BP36896 505 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 NAA10P41227 235 aaPredicted RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 VEGFCP49767 419 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 EMDP50402 254 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 P2RX1P51575 399 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 GPR143P51810 404 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 BLVRAP53004 296 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ADPRHP54922 357 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 PSMD4P55036 377 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 RAB38P57729 211 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 TAS2R20P59543 309 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 KRTAP10-3P60369 221 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ERVFC1-1P60608 527 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 PRPS1P60891 318 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 RPS21P63220 83 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 SIRPAP78324 504 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 BTN3A2P78410 334 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 IGLV3-21P80748 117 aaPredicted RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 MAT1AQ00266 395 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 LGALS3BPQ08380 585 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 DMWDQ09019 674 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ILF3Q12906 894 aaKnown RBP eCLIP2.2□□□□□ -2.06
SPG11-223ENST00000560858 SNTB2Q13425 540 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 CBFBQ13951 182 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CAMK1Q14012 370 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 OPCMLQ14982 345 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 GPR68Q15743 365 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 LINC00303Q3SY05 128 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 DEFB134Q4QY38 66 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 TP53I3Q53FA7 332 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 TRMT12Q53H54 448 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 TCTE1Q5JU00 501 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 LCE1FQ5T754 118 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 FAM166AQ6J272 317 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 TMEM81Q6P7N7 255 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 SPSB3Q6PJ21 355 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 KIAA1324Q6UXG2 1013 aaKnown RBP2.2□□□□□ -2.06
SPG11-223ENST00000560858 LRRN1Q6UXK5 716 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 TFAP2EQ6VUC0 442 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 STAC2Q6ZMT1 411 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 C3P1Q6ZMU1 363 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 DPY19L2P2Q6ZN68 376 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 Q6ZTK2 550 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 MTSS1LQ765P7 747 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ABHD13Q7L211 337 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 SLC16A9Q7RTY1 509 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 SLC36A1Q7Z2H8 476 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 FAM122BQ7Z309 247 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 ZNF550Q7Z398 422 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 NUP54Q7Z3B4 507 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 KCTD20Q7Z5Y7 419 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 LRRTM1Q86UE6 522 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CDC20BQ86Y33 519 aa2.2□□□□□ -2.06
SPG11-223ENST00000560858 CDH26Q8IXH8 852 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms