RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 M0R135 149 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF208O43345 1280 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 KDM4BO94953 1096 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TGM6O95932 706 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 CRYAAP02489 173 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 RLN1P04808 185 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 CLEC2LP0C7M8 214 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 BMP4P12644 408 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TGFBR2P37173 567 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 CD79BP40259 229 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TGM4P49221 684 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 CX3CR1P49238 355 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 BMXP51813 675 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TSPAN5P62079 268 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 RAB40BQ12829 278 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TBR1Q16650 682 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TRIM16LQ309B1 348 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 FAHD1Q6P587 224 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF704Q6ZNC4 412 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TMPRSS11FQ6ZWK6 438 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 SLC43A2Q8N370 569 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 RNASE11Q8TAA1 199 aaKnown RBP4.84□□□□□ -1.63
VPS13C-209ENST00000560637 NDNFQ8TB73 568 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 PSMF1Q92530 271 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 HAS2Q92819 552 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 SNRNP40Q96DI7 357 aaKnown RBP4.84□□□□□ -1.63
VPS13C-209ENST00000560637 BORCS8Q96FH0 119 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF799Q96GE5 643 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 DDX28Q9NUL7 540 aaKnown RBP4.84□□□□□ -1.63
VPS13C-209ENST00000560637 GDF2Q9UK05 429 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-209ENST00000560637 FBXO9Q9UK97 447 aaPredicted RBP4.84□□□□□ -1.63
VPS13C-209ENST00000560637 SLC7A11Q9UPY5 501 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 NEUROG3Q9Y4Z2 214 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 HTR3EA5X5Y0 456 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 CENPBD1B2RD01 187 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 ZNF878C9JN71 531 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 HSPA12AO43301 675 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 SERPINA2P20848 420 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 GABRR1P24046 479 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 DUSP1P28562 367 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 HTR1FP30939 366 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 GABRA2P47869 451 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 EGR4Q05215 589 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 CEBPEQ15744 281 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 PABPC1L2AQ5JQF8 200 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 AWAT2Q6E213 333 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 XAF1Q6GPH4 301 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 OR10K2Q6IF99 312 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 MZT2AQ6P582 158 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 VWA1Q6PCB0 445 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 PXKQ7Z7A4 578 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 GPALPP1Q8IXQ4 340 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 ASCC1Q8N9N2 400 aaKnown RBP4.84□□□□□ -1.63
VPS13C-209ENST00000560637 GJC3Q8NFK1 279 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 FCGR1BQ92637 280 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 HGDQ93099 445 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 TMEM43Q9BTV4 400 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 OR10A2Q9H208 303 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 GPR173Q9NS66 373 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 PTTG3PQ9NZH4 202 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 PSORS1C1Q9UIG5 152 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 ADAM30Q9UKF2 790 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 LHX6Q9UPM6 363 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 PLXNA2O75051 1894 aa4.84□□□□□ -1.63
VPS13C-209ENST00000560637 A0A1W2PQD3 144 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 SLC22A23A1A5C7 686 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 FABP12A6NFH5 140 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 METTL15A6NJ78 407 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 CRTAPO75718 401 aaPredicted RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 PAHP00439 452 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 YES1P07947 543 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 PIPP12273 146 aaPredicted RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF44P15621 663 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 GRK5P34947 590 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 LIPAP38571 399 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 C21orf62-AS1Q17RA5 79 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 RNFT1Q5M7Z0 435 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 C11orf88Q6PI97 169 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 NUFIP2Q7Z417 695 aaKnown RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 TSEN54Q7Z6J9 526 aaKnown RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 LSMEM1Q8N8F7 131 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 NOXO1Q8NFA2 376 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 GPR148Q8TDV2 347 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 RAB2BQ8WUD1 216 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 HOXB13Q92826 284 aaPredicted RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 ISOC1Q96CN7 298 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF837Q96EG3 531 aaPredicted RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 CENPOQ9BU64 300 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 SLC19A3Q9BZV2 496 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 ATG5Q9H1Y0 275 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 CXorf56Q9H5V9 222 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF703Q9H7S9 590 aaPredicted RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 CNOT11Q9UKZ1 510 aaKnown RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 PAIP2BQ9ULR5 123 aaKnown RBP4.84□□□□□ -1.64
VPS13C-209ENST00000560637 HHLA2Q9UM44 414 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 ABCA12Q86UK0 2595 aa4.84□□□□□ -1.64
VPS13C-209ENST00000560637 IGKV1D-42A0A075B6H8 117 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 LOC102723996A0A087X1L8 192 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 A0A0B4J203 849 aa4.83□□□□□ -1.64
VPS13C-209ENST00000560637 TO15178 435 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms