RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SLC7A6Q92536 515 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 RAB1CQ92928 201 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 CMTM5Q96DZ9 223 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 ELMOD3Q96FG2 381 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 TIMD4Q96H15 378 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 ZNF570Q96NI8 536 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 EGLN1Q9GZT9 426 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 FAM107BQ9H098 131 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 ELOVL3Q9HB03 270 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 MED4Q9NPJ6 270 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 ADA2Q9NZK5 511 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 NDUFAF4Q9P032 175 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 KLHL21Q9UJP4 597 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 RPS6KA6Q9UK32 745 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 COA3Q9Y2R0 106 aaPredicted RBP8.68□□□□□ -1.02
LDLR-214ENST00000560628 IER3IP1Q9Y5U9 82 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 V9GYQ6 96 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 SVEP1Q4LDE5 3571 aa8.68□□□□□ -1.02
LDLR-214ENST00000560628 TRAV20A0A0B4J274 112 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 A0A1W2PRQ8 180 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 ISPDA4D126 451 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 NDUFAB1O14561 156 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 SGCEO43556 437 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 DOK2O60496 412 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 UBOX5O94941 541 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 NDUFB2O95178 105 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 VENTXO95231 258 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 ABHD16AO95870 558 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 AVPP01185 164 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 RHCEP18577 417 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 OMPP47874 163 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 CENPAP49450 140 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 KRR1Q13601 381 aaKnown RBP8.67□□□□□ -1.02
LDLR-214ENST00000560628 DGCR6Q14129 220 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 SEC23BQ15437 767 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 FAM209AQ5JX71 171 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 C1orf94Q6P1W5 598 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 ARL9Q6T311 187 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 C1orf229Q6ZS94 237 aaPredicted RBP8.67□□□□□ -1.02
LDLR-214ENST00000560628 VASH1Q7L8A9 365 aaPredicted RBP8.67□□□□□ -1.02
LDLR-214ENST00000560628 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.67□□□□□ -1.02
LDLR-214ENST00000560628 FAM156AQ8NDB6 213 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 CMBLQ96DG6 245 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 C7orf34Q96L11 122 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 DCLRE1CQ96SD1 692 aaKnown RBP8.67□□□□□ -1.02
LDLR-214ENST00000560628 GPA33Q99795 319 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 NDEL1Q9GZM8 345 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 MYLK2Q9H1R3 596 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 SYT4Q9H2B2 425 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 ANKRD19PQ9H560 264 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 CYSLTR2Q9NS75 346 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 DCAF13Q9NV06 445 aaKnown RBP8.67□□□□□ -1.02
LDLR-214ENST00000560628 DCAF16Q9NXF7 216 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 UBAP1Q9NZ09 502 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 ABCD2Q9UBJ2 740 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 NDRG4Q9ULP0 352 aaKnown RBP8.67□□□□□ -1.02
LDLR-214ENST00000560628 AURKCQ9UQB9 309 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 SIGLEC7Q9Y286 467 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 TMEM5Q9Y2B1 443 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 STARD10Q9Y365 291 aa8.67□□□□□ -1.02
LDLR-214ENST00000560628 LOC105371242A0A075B767 164 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 UNC119BA6NIH7 251 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 AHCYL1O43865 530 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 DEAF1O75398 565 aaPredicted RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 GMNNO75496 209 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 KHDRBS3O75525 346 aaKnown RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 GPANK1O95872 356 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 IGHV2-5P01817 119 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 SBK2P0C263 348 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 SDHAP31040 664 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 MSX2P35548 267 aaPredicted RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 LIPAP38571 399 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 CDKN2AP42771 156 aaKnown RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 LIMS1P48059 325 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 TNFAIP6P98066 277 aaPredicted RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 SCRN3Q0VDG4 424 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 DBPQ10586 325 aaPredicted RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 CDK5R2Q13319 367 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 KRT72Q14CN4 511 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 MTX3Q5HYI7 312 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 GPR139Q6DWJ6 353 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 PTCHD4Q6ZW05 846 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 GLB1L2Q8IW92 636 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 C1orf174Q8IYL3 243 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 OR2Z1Q8NG97 314 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 RAB39BQ96DA2 213 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 RSRC1Q96IZ7 334 aaKnown RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 TSSK2Q96PF2 358 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 GAL3ST1Q99999 423 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 NUAK2Q9H093 628 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 SPAG4Q9NPE6 437 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 NRIP3Q9NQ35 241 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 G6PC2Q9NQR9 355 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 TBCCD1Q9NVR7 557 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 PLEK2Q9NYT0 353 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 ASH2LQ9UBL3 628 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 PURGQ9UJV8 347 aaKnown RBP8.66□□□□□ -1.02
LDLR-214ENST00000560628 ZDHHC8Q9ULC8 765 aa8.66□□□□□ -1.02
LDLR-214ENST00000560628 H3BSA7 217 aa8.65□□□□□ -1.02
LDLR-214ENST00000560628 HAX1O00165 279 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms