RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 STMN2Q93045 179 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 PLEKHA8Q96JA3 519 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 OSBPL10Q9BXB5 764 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 NMNAT2Q9BZQ4 307 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 CXXC4Q9H2H0 198 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 NDRG4Q9ULP0 352 aaKnown RBP11.74□□□□□ -0.53
SHMT2-228ENST00000557302 ARID1AO14497 2285 aa11.74□□□□□ -0.53
SHMT2-228ENST00000557302 MAP1AP78559 2803 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-228ENST00000557302 C5orf49A4QMS7 147 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 OVOL3O00110 214 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 SURF4O15260 269 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 DOK2O60496 412 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 GYPBP06028 91 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 OR4A8P0C604 315 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 COX5BP10606 129 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 BMP4P12644 408 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 PAX1P15863 534 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 ZNF823P16415 610 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 SPI1P17947 270 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 PCSK6P29122 969 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 GLRXP35754 106 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 PTH2RP49190 550 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 TESK1Q15569 626 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 ADIPOQQ15848 244 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 TMEM236Q5W0B7 351 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 GJC3Q8NFK1 279 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 OR51L1Q8NGJ5 315 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 OTULINQ96BN8 352 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 PERPQ96FX8 193 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 POM121L2Q96KW2 1035 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 CIB1Q99828 191 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 RBM4BQ9BQ04 359 aaKnown RBP11.73□□□□□ -0.53
SHMT2-228ENST00000557302 CDADC1Q9BWV3 514 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 GSX2Q9BZM3 304 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 ZNF701Q9NV72 531 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-228ENST00000557302 PLEK2Q9NYT0 353 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 TMEFF2Q9UIK5 374 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-228ENST00000557302 KCNG2Q9UJ96 466 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 CMAHPQ9Y471 501 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 LHFPL6Q9Y693 200 aa11.73□□□□□ -0.53
SHMT2-228ENST00000557302 LOC100509620A0A075B734 347 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 FAM183AA6NL82 134 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 B9A039 149 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 PRR23D1E9PI22 279 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 RER1O15258 196 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 GPRIN2O60269 458 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 FAM157BP0CG42 384 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 PRR23D2P0DMB1 279 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 FMO3P31513 532 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 CDKN1AP38936 164 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 RAD52P43351 418 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 HTR5AP47898 357 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 BLVRAP53004 296 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 ATP5J2P56134 94 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 SNRPD2P62316 118 aaKnown RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 PPP2R2BQ00005 443 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 PTGES3Q15185 160 aaKnown RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 RAB35Q15286 201 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 EFNB3Q15768 340 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 SNAPC1Q16533 368 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 C11orf71Q6IPW1 123 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 VASH1Q7L8A9 365 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 OR6K6Q8NGW6 343 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 OR2AJ1Q8NGZ0 328 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 ZNRF4Q8WWF5 429 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 TRMT61AQ96FX7 289 aaKnown RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 CACNG6Q9BXT2 260 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 PRRG3Q9BZD7 231 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 BCL2L14Q9BZR8 327 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 OR51B6Q9H340 312 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 PLK3Q9H4B4 646 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 MED20Q9H944 212 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 MRPL22Q9NWU5 206 aaKnown RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 TVP23BQ9NYZ1 205 aa11.72□□□□□ -0.53
SHMT2-228ENST00000557302 EIF3KQ9UBQ5 218 aaKnown RBP11.72□□□□□ -0.53
SHMT2-228ENST00000557302 PRRC2AP48634 2157 aaKnown RBP11.71□□□□□ -0.53
SHMT2-228ENST00000557302 TEP1Q99973 2627 aaKnown RBP11.71□□□□□ -0.53
SHMT2-228ENST00000557302 OR6C6A6NF89 314 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 TVP23AA6NH52 213 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 SYNGR3O43761 229 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 LCKP06239 509 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 CLUP10909 449 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 GGT2P36268 569 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 UCP2P55851 309 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 HIST1H3AP68431 136 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 ADAM8P78325 824 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 SWI5Q1ZZU3 235 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 CCDC92Q53HC0 331 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-228ENST00000557302 HIST2H3PS2Q5TEC6 136 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 RGS7BPQ6MZT1 257 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-228ENST00000557302 SLC18B1Q6NT16 456 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 PLBD1Q6P4A8 553 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 CORO6Q6QEF8 472 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 LYPD4Q6UWN0 246 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 UNQ6126/PRO20091Q6UXV3 157 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 HIST2H3AQ71DI3 136 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 LINC00346Q8IVM7 164 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 PQLC1Q8N2U9 271 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 OR1F12Q8NHA8 337 aa11.71□□□□□ -0.53
SHMT2-228ENST00000557302 PTP4A1Q93096 173 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms