RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CRYBA1	P05813	215 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	WNT2	P09544	360 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	CPT2	P23786	658 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	RBMX	P38159	391 aa	Known RBP	10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	MDH2	P40926	338 aa	Known RBP	10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	AQP2	P41181	271 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	GUCA1A	P43080	201 aa	Predicted RBP	10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	MNAT1	P51948	309 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	PCBP3	P57721	371 aa	Known RBP	10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	PCBD1	P61457	104 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	ZMYND11	Q15326	602 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	TAF11	Q15544	211 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	ARMC4	Q5T2S8	1044 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	OR2Z1	Q8NG97	314 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	OR4D11	Q8NGI4	311 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	OR4F5	Q8NH21	305 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	VANGL1	Q8TAA9	524 aa	Predicted RBP	10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	ZDHHC16	Q969W1	377 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	UPRT	Q96BW1	309 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	OR2H1	Q9GZK4	316 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	WNT5B	Q9H1J7	359 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	ARMCX1	Q9P291	453 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	IL19	Q9UHD0	177 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	PPP1R3C	Q9UQK1	317 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	LRCH1	Q9Y2L9	728 aa		10.63	□□□□□ -0.71
SHMT2-223	ENST00000556689	VWF	P04275	2813 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	IGKV1D-43	A0A0B4J1Z2	117 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	FAM181B	A6NEQ2	426 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	BBIP1	A8MTZ0	92 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	SURF4	O15260	269 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	HOXA3	O43365	443 aa	Predicted RBP	10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	PLAT	P00750	562 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	MT-ND1	P03886	318 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	OPN1SW	P03999	348 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	CST2	P09228	141 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	NR2C1	P13056	603 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	CD247	P20963	164 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	GSTM3	P21266	225 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	TUBG1	P23258	451 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	LAP3	P28838	519 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	MXRA7	P84157	204 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	CD47	Q08722	323 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	LAPTM4A	Q15012	233 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	SLC25A47	Q6Q0C1	308 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	TRPM8	Q7Z2W7	1104 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	TSPYL5	Q86VY4	417 aa	Predicted RBP	10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	PTOV1	Q86YD1	416 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	MUC20	Q8N307	709 aa	Predicted RBP	10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	WFDC12	Q8WWY7	111 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	HDAC2	Q92769	488 aa	Known RBP	10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	NMD3	Q96D46	503 aa	Known RBP	10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	RBP7	Q96R05	134 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	SIGLEC11	Q96RL6	698 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	PRSS27	Q9BQR3	290 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	SSBP3	Q9BWW4	388 aa	Predicted RBP	10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	PCDHAC1	Q9H158	963 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	MMP27	Q9H306	513 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	TUBG2	Q9NRH3	451 aa		10.62	□□□□□ -0.71
SHMT2-223	ENST00000556689	MDFIC2	A0A1B0GVS7	189 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	CEACAM18	A8MTB9	384 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	TMEM178B	H3BS89	294 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	OR7A10	O76100	309 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	ABHD16A	O95870	558 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	RAG2	P55895	527 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	GNB2	P62879	340 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	PAX2	Q02962	417 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	FMOD	Q06828	376 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	CYP51A1	Q16850	503 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	AGK	Q53H12	422 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	RUNDC3A	Q59EK9	446 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	OLFML2A	Q68BL7	652 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	ZNF774	Q6NX45	483 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	BRICD5	Q6PL45	260 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	DLEU7	Q6UYE1	221 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689		Q6ZR03	302 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	CCDC121	Q6ZUS5	278 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	PCYOX1L	Q8NBM8	494 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	OR10S1	Q8NGN2	331 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	MOSPD2	Q8NHP6	518 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	SLC26A7	Q8TE54	656 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	ITLN1	Q8WWA0	313 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	RAB40A	Q8WXH6	277 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	CMBL	Q96DG6	245 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	SGTB	Q96EQ0	304 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	PLEKHA8	Q96JA3	519 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	CPPED1	Q9BRF8	314 aa	Predicted RBP	10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	TXNIP	Q9H3M7	391 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	PRDM13	Q9H4Q3	707 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	SAR1A	Q9NR31	198 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	TBCCD1	Q9NVR7	557 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	NDE1	Q9NXR1	346 aa		10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	PRKDC	P78527	4128 aa	Known RBP	10.61	□□□□□ -0.71
SHMT2-223	ENST00000556689	TRAV40	A0A0B4J280	105 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	IGHV2-70D	A0A0C4DH43	119 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	NPIPB13	A6NJU9	1138 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	SRRM5	B3KS81	715 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	NPIPB4	C9JG80	1138 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	IFNL4	K9M1U5	179 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689		M0QZ24	198 aa		10.6	□□□□□ -0.71
SHMT2-223	ENST00000556689	TIMM23	O14925	209 aa		10.6	□□□□□ -0.71

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