RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 RGS7BPQ6MZT1 257 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 LYPD4Q6UWN0 246 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 RASSF6Q6ZTQ3 369 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 JAZF1Q86VZ6 243 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 GLB1L2Q8IW92 636 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 AQP12AQ8IXF9 295 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 OR10G2Q8NGC3 310 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 OR1J2Q8NGS2 313 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 OR1J1Q8NGS3 322 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 FAM168AQ92567 244 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 DDOQ99489 341 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 FEVQ99581 238 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 POFUT1Q9H488 388 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 TAAR3PQ9P1P4 343 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 ASH2LQ9UBL3 628 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 REV1Q9UBZ9 1251 aa9.93□□□□□ -0.82
CCDC88C-208ENST00000554165 A0A1W2PPW3 197 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 TCRBV3S1A0A5B6 114 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 SYNGR3O43761 229 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 DOK2O60496 412 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 FKBP6O75344 327 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 NCR1O76036 304 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 STAMBPO95630 424 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 PTHP01270 115 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 HPXP02790 462 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 DBHP09172 617 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 PSKH1P11801 424 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 ZNF250P15622 560 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 NOS3P29474 1203 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 RBMXP38159 391 aaKnown RBP9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 PCBD1P61457 104 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 HNRNPA0Q13151 305 aaKnown RBP9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 CCDC92Q53HC0 331 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 VASH1Q7L8A9 365 aaPredicted RBP9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 IQCF1Q8N6M8 205 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 OR51L1Q8NGJ5 315 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 OR9Q1Q8NGQ5 310 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 GIPC3Q8TF64 312 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 TSSK6Q9BXA6 273 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 DGCR6LQ9BY27 220 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 LRMDAQ9H2I8 198 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 C1orf198Q9H425 327 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 TBC1D23Q9NUY8 699 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 IL20Q9NYY1 176 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 LHFPL6Q9Y693 200 aa9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 YLPM1P49750 1951 aaKnown RBP9.92□□□□□ -0.82
CCDC88C-208ENST00000554165 TVP23AA6NH52 213 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 VWC2LB2RUY7 222 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 M0R233 179 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 SGCEO43556 437 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 IDH3BO43837 385 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 RENP00797 406 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 DAOP14920 347 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 PCSK6P29122 969 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 RPS27P42677 84 aaKnown RBP9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 RAD52P43351 418 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 HTR5AP47898 357 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 EVX1P49640 407 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 PDLIM4P50479 330 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 RPS23P62266 143 aaKnown RBP9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 CBX1P83916 185 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 KCNMB1Q16558 191 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 LINC00346Q8IVM7 164 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 ALDH16A1Q8IZ83 802 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 LINC00471Q8N535 108 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 SLC37A3Q8NCC5 494 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 SLC26A10Q8NG04 563 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 OR52L1Q8NGH7 329 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 ABHD4Q8TB40 342 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 SYNPRQ8TBG9 265 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 SLC25A40Q8TBP6 338 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 MARS2Q96GW9 593 aaKnown RBP9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 C4orf45Q96LM5 186 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 OR2J1Q9GZK6 312 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 RAB1BQ9H0U4 201 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 MRPL22Q9NWU5 206 aaKnown RBP9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 PLEK2Q9NYT0 353 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 PDP1Q9P0J1 537 aaPredicted RBP9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 STARD10Q9Y365 291 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 FKBP7Q9Y680 259 aa9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 ANK3Q12955 4377 aaKnown RBP9.91□□□□□ -0.82
CCDC88C-208ENST00000554165 IGLV3-9A0A075B6K5 115 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 IGHV4-61A0A0C4DH41 118 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 OR6C6A6NF89 314 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 INAFM1C9JVW0 142 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 GNGT2O14610 69 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 TIPRLO75663 272 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 GYPBP06028 91 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 CLUP10909 449 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 COL8A2P25067 703 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 CRABP1P29762 137 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 NR4A2P43354 598 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 MAGEB1P43366 347 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 RIPPLY3P57055 190 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 KLF3P57682 345 aaPredicted RBP9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 DSCR9P59020 149 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 PPP1CBP62140 327 aa9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 LSM6P62312 80 aaKnown RBP9.9□□□□□ -0.82
CCDC88C-208ENST00000554165 TEKQ02763 1124 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms