RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 KLHL12Q53G59 568 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 CORO6Q6QEF8 472 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 LYPD4Q6UWN0 246 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 PAMR1Q6UXH9 720 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 C20orf204Q6ZNR8 217 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 CDH24Q86UP0 819 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 LINC00346Q8IVM7 164 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 TCEANCQ8N8B7 351 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 OR2AJ1Q8NGZ0 328 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 DHRS9Q9BPW9 319 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 GRIP2Q9C0E4 1043 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 DCLRE1BQ9H816 532 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 PLEK2Q9NYT0 353 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 ST6GALNAC2Q9UJ37 374 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 KCNG2Q9UJ96 466 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 SPEF1Q9Y4P9 236 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 LHFPL6Q9Y693 200 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 FBN2P35556 2912 aa14.05□□□□□ -0.16
CHMP1A-209ENST00000550872 M0R129 80 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 RER1O15258 196 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 TLX2O43763 284 aaPredicted RBP14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 DOK2O60496 412 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 TMCC2O75069 709 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 GLCEO94923 617 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 RAF1P04049 648 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 DNASE1P24855 282 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 GGT2P36268 569 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 FABP6P51161 128 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 RPS7P62081 194 aaKnown RBP14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 GALK2Q01415 458 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 LINC01590Q5TEZ4 76 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 LPCAT4Q643R3 524 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 KRT80Q6KB66 452 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 VHLLQ6RSH7 139 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 GALNT4Q8N4A0 578 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 BBS1Q8NFJ9 593 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 GJC3Q8NFK1 279 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 SMAP2Q8WU79 429 aaPredicted RBP14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 TOR3AQ9H497 397 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 WDR76Q9H967 626 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 H2AFY2Q9P0M6 372 aaPredicted RBP14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 COMMD3-BMI1R4GMX3 469 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 TACC2O95359 2948 aa14.04□□□□□ -0.16
CHMP1A-209ENST00000550872 PDZD2O15018 2839 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 LOC100509620A0A075B734 347 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 C5orf49A4QMS7 147 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 ZNF593O00488 134 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 PRODHO43272 600 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 COX5BP10606 129 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 NR4A1P22736 598 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 GSTT1P30711 240 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 APOBEC3AP31941 199 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 HTR5AP47898 357 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 ENTPD1P49961 510 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 HIST1H3AP68431 136 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 SNTB2Q13425 540 aaKnown RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 CCDC92Q53HC0 331 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 HIST2H3PS2Q5TEC6 136 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 SLC18B1Q6NT16 456 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 ZNF544Q6NX49 715 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 TMEM154Q6P9G4 183 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 HIST2H3AQ71DI3 136 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 VASH1Q7L8A9 365 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 FBXL14Q8N1E6 418 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 PAQR4Q8N4S7 273 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 NUP37Q8NFH4 326 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 TMEM163Q8TC26 289 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 ZMYND19Q96E35 227 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 POM121L2Q96KW2 1035 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 IL4I1Q96RQ9 567 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 CA10Q9NS85 328 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 FAIMQ9NVQ4 179 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 CYB5R1Q9UHQ9 305 aa14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 GDF2Q9UK05 429 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 NDRG4Q9ULP0 352 aaKnown RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 RAI1Q7Z5J4 1906 aaPredicted RBP14.03□□□□□ -0.16
CHMP1A-209ENST00000550872 VSTM5A8MXK1 200 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 ATE1O95260 518 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 SNAP29O95721 258 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 SPARCP09486 303 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 CD53P19397 219 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 TTKP33981 857 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 RPS27P42677 84 aaKnown RBP14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 CDC42P60953 191 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 EFNB1P98172 346 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 APOFQ13790 326 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 RAB35Q15286 201 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 SLC35D3Q5M8T2 416 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 ELFN2Q5R3F8 820 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 BCDIN3DQ7Z5W3 292 aaKnown RBP14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 ERI1Q8IV48 349 aaKnown RBP14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 OR6N2Q8NGY6 317 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 OR1F12Q8NHA8 337 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 HRASLS5Q96KN8 279 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 INTS14Q96SY0 518 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 MBOAT4Q96T53 435 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 PITX2Q99697 317 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 CCL19Q99731 98 aa14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 EIF3KQ9UBQ5 218 aaKnown RBP14.02□□□□□ -0.17
CHMP1A-209ENST00000550872 NKX1-2Q9UD57 310 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms