RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 GRINAQ7Z429 371 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SPATA21Q7Z572 469 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ABHD12BQ7Z5M8 362 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 EPHX4Q8IUS5 362 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SLC22A9Q8IVM8 553 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 IQCF2Q8IXL9 164 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 RIMKLAQ8IXN7 391 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM99Q8N816 258 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SETD9Q8NE22 299 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 OR7A2PQ8NGA2 310 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 OR9K2Q8NGE7 335 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 OR5D16Q8NGK9 328 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NFKBIDQ8NI38 313 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NANPQ8TBE9 248 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 MIPOL1Q8TD10 442 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SFXN5Q8TD22 340 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 C17orf50Q8WW18 174 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 MOAP1Q96BY2 351 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 DNAJA3Q96EY1 480 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ANKRD27Q96NW4 1050 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TSSK3Q96PN8 268 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 DUX5Q96PT3 197 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 PAFAH2Q99487 392 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NAPGQ99747 312 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 CHCHD6Q9BRQ6 235 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NAA11Q9BSU3 229 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NUF2Q9BZD4 464 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 MRPL37Q9BZE1 423 aaKnown RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 LINC00470Q9BZP3 86 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF350Q9GZX5 532 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TPK1Q9H3S4 243 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF665Q9H7R5 613 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NTN4Q9HB63 628 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 LPAR2Q9HBW0 351 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 MID1IP1Q9NPA3 183 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 EXOSC3Q9NQT5 275 aaKnown RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF275Q9NSD4 429 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 DDX28Q9NUL7 540 aaKnown RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 B3GNT2Q9NY97 397 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 NLKQ9UBE8 527 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 MKLN1Q9UL63 735 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 EMCNQ9ULC0 261 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 PCDHGB4Q9UN71 923 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 UTP11Q9Y3A2 253 aaKnown RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TMED5Q9Y3A6 229 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 TMED7Q9Y3B3 224 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 CMAHPQ9Y471 501 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 MMP24Q9Y5R2 645 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 SPIN1Q9Y657 262 aaPredicted RBP2.99□□□□□ -1.93
LIMA1-206ENST00000550611 ABCA13Q86UQ4 5058 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 KIAA1109Q2LD37 5005 aa2.99□□□□□ -1.93
LIMA1-206ENST00000550611 DSPPQ9NZW4 1301 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 DNAH7Q8WXX0 4024 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 PPIAL4EA0A075B759 164 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 A0A087X0M5 115 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 PPIAL4CA0A0B4J2A2 164 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 A0A1B0GX30 115 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 TMEM247A6NEH6 219 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 PGPEP1LA6NFU8 196 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 GAGE10A6NGK3 116 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 OR6C65A6NJZ3 312 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 DUXAA6NLW8 204 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 CLDN24A6NM45 220 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 C17orf100A8MU93 164 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF587BE7ETH6 402 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 PPIAL4DF5H284 164 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 CLDN34H7C241 214 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 RHODO00212 210 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 AP3D1O14617 1153 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 SCAMP2O15127 329 aaKnown RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 PPIHO43447 177 aaKnown RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 SLC25A17O43808 307 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 SCN2BO60939 215 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 NPIPB7O75200 414 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 AKR7A3O95154 331 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 NDUFB8O95169 186 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 VAMP5O95183 116 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 MPZL1O95297 269 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 C6orf47O95873 294 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 IGHV2-5P01817 119 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 GSTA1P08263 222 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 FGF4P08620 206 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 PPIAL4FP0DN26 164 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 ZNF14P17017 642 aaPredicted RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 CDH2P19022 906 aaPredicted RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 TCN1P20061 433 aaPredicted RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 RYKP34925 604 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 PHBP35232 272 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 GLRXP35754 106 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 ARL3P36405 182 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 ARR3P36575 388 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 ALDH3B1P43353 468 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 IDH2P48735 452 aaKnown RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 CCR4P51679 360 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 POLR2HP52434 150 aaKnown RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 P2RX3P56373 397 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 UBE2NP61088 152 aaKnown RBP2.98□□□□□ -1.93
LIMA1-206ENST00000550611 NAA20P61599 178 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 HBA1P69905 142 aa2.98□□□□□ -1.93
LIMA1-206ENST00000550611 KCNJ10P78508 379 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms