RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 C11orf40Q8WZ69 217 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 HSD17B8Q92506 261 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 OTULINQ96BN8 352 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 TMEM80Q96HE8 168 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 TEAD3Q99594 435 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 MED18Q9BUE0 208 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 ZNF416Q9BWM5 594 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 CCDC90BQ9GZT6 254 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 RACGAP1Q9H0H5 632 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 PAK1IP1Q9NWT1 392 aaPredicted RBP11.31□□□□□ -0.6
CCDC42-202ENST00000539522 FKBP7Q9Y680 259 aa11.31□□□□□ -0.6
CCDC42-202ENST00000539522 SETXQ7Z333 2677 aaKnown RBP11.3□□□□□ -0.6
CCDC42-202ENST00000539522 IGHV1-18A0A0C4DH31 117 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.3□□□□□ -0.6
CCDC42-202ENST00000539522 A0A1W2PPL8 197 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 SLC22A31A6NKX4 558 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 CYSRT1A8MQ03 144 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 KHDRBS3O75525 346 aaKnown RBP11.3□□□□□ -0.6
CCDC42-202ENST00000539522 WNT11O96014 354 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 PLAUP00749 431 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 IGKV3-15P01624 115 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 HRGP04196 525 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 ZNF14P17017 642 aaPredicted RBP11.3□□□□□ -0.6
CCDC42-202ENST00000539522 CDH11P55287 796 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 TGFBR3Q03167 851 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 PIGFQ07326 219 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 RAB40BQ12829 278 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 RNLSQ5VYX0 342 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 KCTD8Q6ZWB6 473 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 P2RY8Q86VZ1 359 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 GLB1L2Q8IW92 636 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 LRRC18Q8N456 261 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 CPEB3Q8NE35 698 aaKnown RBP11.3□□□□□ -0.6
CCDC42-202ENST00000539522 SGCDQ92629 289 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 RNFT2Q96EX2 444 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 LRRC46Q96FV0 321 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 MS4A3Q96HJ5 214 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 TMEM204Q9BSN7 226 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 CDCA4Q9BXL8 241 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 RERGLQ9H628 205 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 SIAEQ9HAT2 523 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 FGF20Q9NP95 211 aaPredicted RBP11.3□□□□□ -0.6
CCDC42-202ENST00000539522 HAO2Q9NYQ3 351 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 NDUFA13Q9P0J0 144 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 KCNN3Q9UGI6 736 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 EXOGQ9Y2C4 368 aaKnown RBP11.3□□□□□ -0.6
CCDC42-202ENST00000539522 LHFPL6Q9Y693 200 aa11.3□□□□□ -0.6
CCDC42-202ENST00000539522 ITPR2Q14571 2701 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 TVP23AA6NH52 213 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 A6NHS1 94 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 A6NNC1 897 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 CTAG2O75638 210 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 FADS2O95864 444 aaKnown RBP11.29□□□□□ -0.6
CCDC42-202ENST00000539522 HTR1AP08908 422 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 OR8G3PP0DMU2 310 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 HOXB1P14653 301 aaPredicted RBP11.29□□□□□ -0.6
CCDC42-202ENST00000539522 DCKP27707 260 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 ATP6V1E1P36543 226 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 RPS27P42677 84 aaKnown RBP11.29□□□□□ -0.6
CCDC42-202ENST00000539522 ALDH3B2P48448 385 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 ZNF83P51522 516 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 ZNF84P51523 738 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 MVKQ03426 396 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 EMX1Q04741 257 aaPredicted RBP11.29□□□□□ -0.6
CCDC42-202ENST00000539522 ZNF91Q05481 1191 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 SGCAQ16586 387 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 KLHL12Q53G59 568 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 SLC35D3Q5M8T2 416 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 NCMAPQ5T1S8 102 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 ALKBH2Q6NS38 261 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 DNM1P34Q6PK57 102 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 ZNF511Q8NB15 262 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 SIGLEC11Q96RL6 698 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 WNT5BQ9H1J7 359 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 OR51V1Q9H2C8 321 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 WDR76Q9H967 626 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 MARCH7Q9H992 704 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 NDRG3Q9UGV2 375 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 MOKQ9UQ07 419 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 AMDHD2Q9Y303 409 aa11.29□□□□□ -0.6
CCDC42-202ENST00000539522 CADP27708 2225 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 DPPA5A6NC42 116 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 MT-ND2P03891 347 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 CST2P09228 141 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 CECR9P0C854 216 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 COX6B1P14854 86 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 CBR1P16152 277 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 ZNF32P17041 273 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 NPR2P20594 1047 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 MSR1P21757 451 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 ANOS1P23352 680 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 CRABP1P29762 137 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 C21orf33P30042 268 aaPredicted RBP11.28□□□□□ -0.6
CCDC42-202ENST00000539522 CALCRP30988 508 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 TTKP33981 857 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 CENPAP49450 140 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 HIST1H3AP68431 136 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 PSG4Q00888 419 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 HSF2Q03933 536 aa11.28□□□□□ -0.6
CCDC42-202ENST00000539522 BSPH1Q075Z2 132 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms