RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 NUPL2O15504 423 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 CCNB2O95067 398 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 UTS2O95399 124 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 LSM8O95777 96 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 BCHEP06276 602 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 GNAO1P09471 354 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 OR5H8P0DN80 308 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 ZNF43P17038 809 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 RAB3AP20336 220 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 MAGEA1P43355 309 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 HCAR3P49019 387 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 RAB7AP51149 207 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 PRRX1P54821 245 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CCNA1P78396 465 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 TRAM2Q15035 370 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CHRNA6Q15825 494 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 SNRNP35Q16560 246 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 SMUG1Q53HV7 270 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 TCEAL5Q5H9L2 206 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 TPTE2P1Q5T6R2 138 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 ZNF691Q5VV52 312 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 METTL21CQ5VZV1 264 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 AP1ARQ63HQ0 302 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 LRRC66Q68CR7 880 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 LYPD2Q6UXB3 125 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 BZW1Q7L1Q6 419 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 ABHD12BQ7Z5M8 362 aaPredicted RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 MMAAQ8IVH4 418 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 C12orf56Q8IXR9 622 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CMTM1Q8IZ96 169 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 GABRG1Q8N1C3 465 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 FAM86B1Q8N7N1 296 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CHST4Q8NCG5 386 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CCDC148Q8NFR7 591 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 OR9A2Q8NGT5 310 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 LYPD6BQ8NI32 183 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 COQ8AQ8NI60 647 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 OR51E1Q8TCB6 317 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CAPSLQ8WWF8 208 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 TCEAL3Q969E4 200 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 DCPSQ96C86 337 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 XPO6Q96QU8 1125 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 OR2A5Q96R48 311 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CTRCQ99895 268 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 C11orf70Q9BRQ4 267 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CWH43Q9H720 699 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 SYNDIG1Q9H7V2 258 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 MRM3Q9HC36 420 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 CHRAC1Q9NRG0 131 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 RBAKQ9NYW8 714 aaPredicted RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 ZNRD1Q9P1U0 126 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 PRG3Q9Y2Y8 225 aaPredicted RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 F11RQ9Y624 299 aaKnown RBP1.7□□□□□ -2.14
CD44-238ENST00000534296 KCNE3Q9Y6H6 103 aa1.7□□□□□ -2.14
CD44-238ENST00000534296 CDC42BPBQ9Y5S2 1711 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 IGLV1-50A0A075B6I6 118 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 C7orf66A4D0T2 115 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 RAD51CO43502 376 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 FOXH1O75593 365 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 ERCC1P07992 297 aaPredicted RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 MRPL3P09001 348 aaKnown RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 BCKDHBP21953 392 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 IL32P24001 234 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 SSTR5P35346 364 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 TALDO1P37837 337 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 CRISP3P54108 245 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 CDKN2DP55273 166 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 PPP1CBP62140 327 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 IRX3P78415 501 aaPredicted RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 SP4Q02446 784 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 MXD1Q05195 221 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 MADCAM1Q13477 382 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 XKR4Q5GH76 650 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 SOHLH1Q5JUK2 328 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 UBE2UQ5VVX9 321 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 SPESP1Q6UW49 350 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 NCCRP1Q6ZVX7 275 aaPredicted RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 MICU2Q8IYU8 434 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 GTPBP8Q8N3Z3 284 aaPredicted RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 ARRDC1Q8N5I2 433 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 FBXL13Q8NEE6 735 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 OR10G2Q8NGC3 310 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 OR6Q1Q8NGQ2 317 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 ACMSDQ8TDX5 336 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 ZNF721Q8TF20 911 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 FRZBQ92765 325 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 SEH1LQ96EE3 360 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 PRRC1Q96M27 445 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 TGS1Q96RS0 853 aaKnown RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 TIMM17AQ99595 171 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 HSD17B10Q99714 261 aaKnown RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 MTG1Q9BT17 334 aaPredicted RBP1.69□□□□□ -2.14
CD44-238ENST00000534296 LCE3DQ9BYE3 92 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 SPNS1Q9H2V7 528 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 EXO5Q9H790 373 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 EDA2RQ9HAV5 297 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 ZC4H2Q9NQZ6 224 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 PIKFYVEQ9Y2I7 2098 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 LRP4O75096 1905 aa1.69□□□□□ -2.14
CD44-238ENST00000534296 CACNA1AO00555 2505 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms