RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 RNF212BA8MTL3 300 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 PLPP2O43688 288 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 AK1P00568 194 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 CRHP06850 196 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 PSKH1P11801 424 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 DDOSTP39656 456 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 MAGEB1P43366 347 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 NRG3P56975 720 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 BDH1Q02338 343 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 FGFBP1Q14512 234 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 CD226Q15762 336 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 YRDCQ86U90 279 aaKnown RBP7.29□□□□□ -1.24
NEDD8-207ENST00000533242 GRAMD2AQ8IUY3 354 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 LSMEM1Q8N8F7 131 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 ABHD4Q8TB40 342 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 UBASH3BQ8TF42 649 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 COQ7Q99807 217 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 RTN4RQ9BZR6 473 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 RNF121Q9H920 327 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 TRIM36Q9NQ86 728 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 EXTL2Q9UBQ6 330 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 COPS3Q9UNS2 423 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 RASD1Q9Y272 281 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 IER3IP1Q9Y5U9 82 aa7.29□□□□□ -1.24
NEDD8-207ENST00000533242 ARID1AO14497 2285 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 IGKV1D-42A0A075B6H8 117 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 A0A1W2PNV4 684 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 RIIAD1A6NNX1 92 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 PSMD9O00233 223 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 HCRTR2O43614 444 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 TNFSF13O75888 250 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 KRT8P05787 483 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 NAGAP17050 411 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 MAP2K3P46734 347 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 MTNR1BP49286 362 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 RAB25P57735 213 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 CD83Q01151 205 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ZNF141Q15928 474 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 TATDN3Q17R31 274 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 LCN1P1Q5VSP4 162 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 HBMQ6B0K9 141 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 DMKNQ6E0U4 476 aaPredicted RBP7.28□□□□□ -1.24
NEDD8-207ENST00000533242 CBLN3Q6UW01 205 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 APOOLQ6UXV4 268 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ESPNLQ6ZVH7 1005 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 CEACAM19Q7Z692 300 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 PXKQ7Z7A4 578 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 CDK20Q8IZL9 346 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 OR5H6Q8NGV6 325 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 IGFBPL1Q8WX77 278 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 GHSRQ92847 366 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ADIPOR1Q96A54 375 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 RASD2Q96D21 266 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 DNAJA3Q96EY1 480 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 PELI1Q96FA3 418 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ABHD1Q96SE0 405 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 NMNAT3Q96T66 252 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 WACQ9BTA9 647 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 METTL7AQ9H8H3 244 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 DDX28Q9NUL7 540 aaKnown RBP7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ELOVL5Q9NYP7 299 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 CLEC4AQ9UMR7 237 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 TMEM5Q9Y2B1 443 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 HIVEP2P31629 2446 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 JMJD1CQ15652 2540 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 OR6C68A6NDL8 312 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 HMX3A6NHT5 357 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 FAM25AB3EWG3 89 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 FAM25CB3EWG5 89 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 FAM25GB3EWG6 89 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 LYRM1O43325 122 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 SELENOFO60613 162 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 COQ9O75208 318 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 MT-ND5P03915 603 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ZNF3P17036 446 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 LOXP28300 417 aaPredicted RBP7.28□□□□□ -1.24
NEDD8-207ENST00000533242 GRPRP30550 384 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 RPS5P46782 204 aaKnown RBP7.28□□□□□ -1.24
NEDD8-207ENST00000533242 RPS11P62280 158 aaKnown RBP eCLIP7.28□□□□□ -1.24
NEDD8-207ENST00000533242 KRTAP1-1Q07627 177 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 FAM27E3Q08E93 113 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 FUT7Q11130 342 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 TRIQKQ629K1 86 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 SFXN4Q6P4A7 337 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 NUP54Q7Z3B4 507 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 SAMD12Q8N8I0 201 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ZNF615Q8N8J6 731 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 MOSPD2Q8NHP6 518 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 HSD17B8Q92506 261 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 HGDQ93099 445 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 TRIM63Q969Q1 353 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 RNF166Q96A37 237 aaPredicted RBP7.28□□□□□ -1.24
NEDD8-207ENST00000533242 C3orf49Q96BT1 292 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 TSSK2Q96PF2 358 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 DDOQ99489 341 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 G6PC3Q9BUM1 346 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 POLE3Q9NRF9 147 aa7.28□□□□□ -1.24
NEDD8-207ENST00000533242 RBFOX1Q9NWB1 397 aaKnown RBP7.28□□□□□ -1.24
NEDD8-207ENST00000533242 ICAM5Q9UMF0 924 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms