RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 HIST3H2AQ7L7L0 130 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 SLC36A1Q7Z2H8 476 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 GALNT16Q8N428 558 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 FAM98AQ8NCA5 519 aaKnown RBP4.94□□□□□ -1.62
CD44-236ENST00000533222 B3GALNT2Q8NCR0 500 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 ZNF738Q8NE65 137 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 PROKR2Q8NFJ6 384 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 OR9K2Q8NGE7 335 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 OR5AP2Q8NGF4 316 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 OR10D4PQ8NGN7 298 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 OR1J4Q8NGS1 313 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 OR1J1Q8NGS3 322 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 OR2T35Q8NGX2 323 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 OR5AK3PQ8NH89 298 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 STT3BQ8TCJ2 826 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 CCDC107Q8WV48 283 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 TMEM171Q8WVE6 324 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 GGHQ92820 318 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 HIST1H2ACQ93077 130 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 PGAM5Q96HS1 289 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 PYURFQ96I23 114 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 SLC35E1Q96K37 410 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 SNX22Q96L94 193 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 FER1L6-AS2Q96M78 137 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 ZNF583Q96ND8 569 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 F2RL3Q96RI0 385 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 SLC6A7Q99884 636 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 SYT17Q9BSW7 474 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 MECRQ9BV79 373 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 TAPBPLQ9BX59 468 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 PRRG3Q9BZD7 231 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 RAB6CQ9H0N0 254 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 SLCO5A1Q9H2Y9 848 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 MAGIXQ9H6Y5 334 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 TMEM185BQ9H7F4 350 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 ACKR4Q9NPB9 350 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 YAE1D1Q9NRH1 226 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 THSD1Q9NS62 852 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 UQCC1Q9NVA1 299 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 PLEKHJ1Q9NW61 149 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 ELOVL5Q9NYP7 299 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 CNOT2Q9NZN8 540 aaKnown RBP4.94□□□□□ -1.62
CD44-236ENST00000533222 NLKQ9UBE8 527 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 ZNF222Q9UK12 451 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 A4GNTQ9UNA3 340 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 ST3GAL6Q9Y274 331 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 GSTK1Q9Y2Q3 226 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 RAP2CQ9Y3L5 183 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 RBM7Q9Y580 266 aaKnown RBP4.94□□□□□ -1.62
CD44-236ENST00000533222 UBIAD1Q9Y5Z9 338 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 TNS3Q68CZ2 1445 aa4.94□□□□□ -1.62
CD44-236ENST00000533222 PLIN4Q96Q06 1357 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 LOC105371242A0A075B767 164 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 A0A087WWC5 75 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 KLF18A0A0U1RQI7 1052 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 HYKKA2RU49 373 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 OR2M5A3KFT3 312 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 ZNF726A6NNF4 738 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 G3V3Y1 287 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 RAB27BO00194 218 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 PIP5K1BO14986 540 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 TRIAP1O43715 76 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CTSVO60911 334 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CA11O75493 328 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 OR2F2O95006 317 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 LRATO95237 230 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CLIC3O95833 236 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 IGSF6O95976 241 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CD5P06127 495 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CSF1P09603 554 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 GZMBP10144 247 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 HOXB2P14652 356 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 GABRB1P18505 474 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 TUBG1P23258 451 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 MST1P26927 711 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 ACVRL1P37023 503 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 ARRB1P49407 418 aaPredicted RBP4.93□□□□□ -1.62
CD44-236ENST00000533222 NPY4RP50391 375 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 METAP2P50579 478 aaKnown RBP eCLIP4.93□□□□□ -1.62
CD44-236ENST00000533222 RAB28P51157 221 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 MVDP53602 400 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 OR4D2P58180 307 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CSNK2A1P68400 391 aaPredicted RBP4.93□□□□□ -1.62
CD44-236ENST00000533222 SLC35A1P78382 337 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 ZXDBP98169 803 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 NFATC2Q13469 925 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 OR5I1Q13606 314 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 OR2F1Q13607 317 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 QSER1Q2KHR3 1735 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 QRICH1Q2TAL8 776 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CTU2Q2VPK5 515 aaKnown RBP4.93□□□□□ -1.62
CD44-236ENST00000533222 PDLIM3Q53GG5 364 aaPredicted RBP4.93□□□□□ -1.62
CD44-236ENST00000533222 ERCC6L2Q5T890 1561 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 LIPKQ5VXJ0 399 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 CST9Q5W186 159 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 ZNF770Q6IQ21 691 aaPredicted RBP4.93□□□□□ -1.62
CD44-236ENST00000533222 PRR27Q6MZM9 219 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 TBPL2Q6SJ96 375 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 HEPN1Q6WQI6 88 aa4.93□□□□□ -1.62
CD44-236ENST00000533222 ACOT7LQ6ZUV0 252 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms