RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FREM3P0C091 2139 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 A0A1W2PQ09 198 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 CDK2AP1O14519 115 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 GFRA3O60609 400 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 HPNP05981 417 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 NR2C1P13056 603 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 PHYHD1Q5SRE7 291 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 TMPRSS7Q7RTY8 843 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 MDS2Q8NDY4 140 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 OR2V1Q8NHB1 315 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 SLAMF6Q96DU3 332 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 C1orf198Q9H425 327 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 TCF7L1Q9HCS4 588 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 G6PC2Q9NQR9 355 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 EXTL2Q9UBQ6 330 aa18.36■□□□□ 0.53
VPS28-209ENST00000528142 DCHS1Q96JQ0 3298 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 A0A0B4J203 849 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 IFITM5A6NNB3 132 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 LINC01387J3KSC0 135 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 SNRPBP14678 240 aaKnown RBP18.35■□□□□ 0.53
VPS28-209ENST00000528142 ADRA2CP18825 462 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 POU3F2P20265 443 aaPredicted RBP18.35■□□□□ 0.53
VPS28-209ENST00000528142 CSNK1A1P48729 337 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 SOX8P57073 446 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 C10orf128Q5T292 105 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 TMEM106AQ96A25 262 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 CENPMQ9NSP4 180 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 GDF2Q9UK05 429 aaPredicted RBP18.35■□□□□ 0.53
VPS28-209ENST00000528142 EMC9Q9Y3B6 208 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 V9GY05 133 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 NCKAP5O14513 1909 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 TRAV8-7A0A075B6U6 113 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 ARGFXA6NJG6 315 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 CXCL13O43927 109 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 TMEM127O75204 238 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 H2BFMP0C1H6 154 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 LIPCP11150 499 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 SPNP16150 400 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 DCTDP32321 178 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 BCAP31P51572 246 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 IL18Q14116 193 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 CFAP77Q6ZQR2 320 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 UBQLNLQ8IYU4 475 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 OR4M1Q8NGD0 313 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 OR10D3Q8NH80 312 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 HTRA1Q92743 480 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 THRSPQ92748 146 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 SLITRK2Q9H156 845 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 B4GALT7Q9UBV7 327 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 FOXD3Q9UJU5 478 aaPredicted RBP18.35■□□□□ 0.53
VPS28-209ENST00000528142 SPATA2Q9UM82 520 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 GTF2A1LQ9UNN4 478 aa18.35■□□□□ 0.53
VPS28-209ENST00000528142 AIPO00170 330 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 RFC3P40938 356 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 MMP16P51512 607 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 SCN1BQ07699 218 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 FOXL2NBQ6ZUU3 175 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 OR6N1Q8NGY5 312 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 KCNJ15Q99712 375 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 TTTY12Q9BZ98 90 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 OR52A1Q9UKL2 312 aa18.34■□□□□ 0.53
VPS28-209ENST00000528142 TMEM269A0A1B0GVZ9 245 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 OR5H15A6NDH6 313 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 ZNF716A6NP11 495 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 H3BSH0 61 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 SP1P08047 785 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 CELA3AP09093 270 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 EIF1AXP47813 144 aaKnown RBP18.33■□□□□ 0.53
VPS28-209ENST00000528142 SELENOPP49908 381 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 CAMK2BQ13554 666 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 ABLIM2Q6H8Q1 611 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 RHOUQ7L0Q8 258 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 VASH2Q86V25 355 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.33■□□□□ 0.53
VPS28-209ENST00000528142 ZNF433Q8N7K0 673 aaPredicted RBP18.33■□□□□ 0.53
VPS28-209ENST00000528142 INTS12Q96CB8 462 aaKnown RBP18.33■□□□□ 0.53
VPS28-209ENST00000528142 BRD7Q9NPI1 651 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 FAM206AQ9NX38 181 aa18.33■□□□□ 0.53
VPS28-209ENST00000528142 A0A0G2JMP0 313 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 A0A0X1KG70 313 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 NME2P1O60361 137 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 HLA-DQB1P01920 261 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 APOA1P02647 267 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 ISG15P05161 165 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 NME2P22392 152 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 RSPO4Q2I0M5 234 aaPredicted RBP18.33■□□□□ 0.52
VPS28-209ENST00000528142 AGAP7PQ5VUJ5 663 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 SLC25A25Q6KCM7 469 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 C20orf196Q8IYI0 205 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 Q8N402 240 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 OR4M2Q8NGB6 313 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 OR2AJ1Q8NGZ0 328 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 TSEN15Q8WW01 171 aaKnown RBP18.33■□□□□ 0.52
VPS28-209ENST00000528142 ROBO4Q8WZ75 1007 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 AGAP4Q96P64 663 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 FLVCR1Q9Y5Y0 555 aa18.33■□□□□ 0.52
VPS28-209ENST00000528142 DCDC2BA2VCK2 349 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 A6NL46 340 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 SSX4O60224 188 aa18.32■□□□□ 0.52
VPS28-209ENST00000528142 SLC43A1O75387 559 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms