RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TXNL4BQ9NX01 149 aaKnown RBP18.52■□□□□ 0.55
VPS28-208ENST00000527797 LRP12Q9Y561 859 aa18.52■□□□□ 0.55
VPS28-208ENST00000527797 ZNF587BE7ETH6 402 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 RPL36A-HNRNPH2H7BZ11 118 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 ENDOGQ14249 297 aaKnown RBP18.51■□□□□ 0.55
VPS28-208ENST00000527797 CFAP77Q6ZQR2 320 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 UBE2J2Q8N2K1 259 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 LRRC18Q8N456 261 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 TRMT61AQ96FX7 289 aaKnown RBP18.51■□□□□ 0.55
VPS28-208ENST00000527797 HDHD5Q9BXW7 423 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 DCSTAMPQ9H295 470 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 PRORYQ9H606 182 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 GSTK1Q9Y2Q3 226 aa18.51■□□□□ 0.55
VPS28-208ENST00000527797 CD8B2A6NJW9 211 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 GPRIN2O60269 458 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 RGS9O75916 674 aaPredicted RBP18.5■□□□□ 0.55
VPS28-208ENST00000527797 TPOP07202 933 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 FGF9P31371 208 aaPredicted RBP18.5■□□□□ 0.55
VPS28-208ENST00000527797 PTGER4P35408 488 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 OPRL1P41146 370 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 NANOS3P60323 173 aaKnown RBP18.5■□□□□ 0.55
VPS28-208ENST00000527797 OR2A2Q6IF42 318 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 ZNF544Q6NX49 715 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 FDX2Q6P4F2 183 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 RHOUQ7L0Q8 258 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 KDF1Q8NAX2 398 aaPredicted RBP18.5■□□□□ 0.55
VPS28-208ENST00000527797 GJC3Q8NFK1 279 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 RPS4Y2Q8TD47 263 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 C12orf49Q9H741 205 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 EMC9Q9Y3B6 208 aa18.5■□□□□ 0.55
VPS28-208ENST00000527797 GABRPO00591 440 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 RER1O15258 196 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 WDR1O75083 606 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 CST2P09228 141 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 B4GALT1P15291 398 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 SERPINB10P48595 397 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 TUBA1BP68363 451 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 NRN1LQ496H8 165 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 C22orf42Q6IC83 251 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 TUBA1AQ71U36 451 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 FAM214BQ7L5A3 538 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 ABHD12BQ7Z5M8 362 aaPredicted RBP18.49■□□□□ 0.55
VPS28-208ENST00000527797 C9orf106Q8NAJ2 232 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 OR10S1Q8NGN2 331 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 OR2G2Q8NGZ5 317 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 ABHD4Q8TB40 342 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 HSD17B8Q92506 261 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 TSC22D3Q99576 134 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 FRRS1LQ9P0K9 344 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 PTPRQQ9UMZ3 2332 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 FIGNL2A6NMB9 653 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 ZNF878C9JN71 531 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 SERPINA3P01011 423 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 OR3A2P47893 321 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 TDGF1P3P51864 188 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 TAF13Q15543 124 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 ZNF813Q6ZN06 617 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 SLC22A24Q8N4F4 322 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 OR5AK2Q8NH90 309 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 FAM57AQ8TBR7 257 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 SNRNP40Q96DI7 357 aaKnown RBP18.49■□□□□ 0.55
VPS28-208ENST00000527797 KCTD7Q96MP8 289 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 PDCD1LG2Q9BQ51 273 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 KCNN2Q9H2S1 579 aa18.49■□□□□ 0.55
VPS28-208ENST00000527797 LOC400499M0QZD8 3231 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 FRYQ5TBA9 3013 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 FARS2O95363 451 aaKnown RBP18.48■□□□□ 0.55
VPS28-208ENST00000527797 CD8BP10966 210 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 ABOP16442 354 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 DCTDP32321 178 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 CCR9P51686 369 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 ARF1P84077 181 aaKnown RBP18.48■□□□□ 0.55
VPS28-208ENST00000527797 FAPQ12884 760 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 GUSBP1Q15486 140 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 FBXW9Q5XUX1 488 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 KLHL24Q6TFL4 600 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 TMEM91Q6ZNR0 172 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 GCNT2Q8N0V5 402 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 DYNC2LI1Q8TCX1 351 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 DCLRE1CQ96SD1 692 aaKnown RBP18.48■□□□□ 0.55
VPS28-208ENST00000527797 SH3GL3Q99963 347 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 PRSS50Q9UI38 385 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 ZNF281Q9Y2X9 895 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 R4GMQ9 66 aa18.48■□□□□ 0.55
VPS28-208ENST00000527797 ZFPL1O95159 310 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 HIST1H3AP68431 136 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 KLRB1Q12918 225 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 ZNF829Q3KNS6 432 aaPredicted RBP18.47■□□□□ 0.55
VPS28-208ENST00000527797 HIST2H3PS2Q5TEC6 136 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 HIST2H3AQ71DI3 136 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 CD163Q86VB7 1156 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 FBXO17Q96EF6 278 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 C4orf45Q96LM5 186 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 SLX1AQ9BQ83 275 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 COMMD4Q9H0A8 199 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 SLC25A18Q9H1K4 315 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 NIPAL2Q9H841 368 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 PNRC2Q9NPJ4 139 aaKnown RBP18.47■□□□□ 0.55
VPS28-208ENST00000527797 GALNT8Q9NY28 637 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 FBXL3Q9UKT7 428 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms