RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 OR10H5Q8NGA6 315 aa8.78□□□□□ -1
VPS28-204ENST00000526054 OR2T4Q8NH00 348 aa8.78□□□□□ -1
VPS28-204ENST00000526054 FAM168AQ92567 244 aa8.78□□□□□ -1
VPS28-204ENST00000526054 NABP1Q96AH0 204 aa8.78□□□□□ -1
VPS28-204ENST00000526054 SH3GL3Q99963 347 aa8.78□□□□□ -1
VPS28-204ENST00000526054 RBM4BQ9BQ04 359 aaKnown RBP8.78□□□□□ -1
VPS28-204ENST00000526054 WACQ9BTA9 647 aa8.78□□□□□ -1
VPS28-204ENST00000526054 RBM4Q9BWF3 364 aaKnown RBP8.78□□□□□ -1
VPS28-204ENST00000526054 PRRG3Q9BZD7 231 aa8.78□□□□□ -1
VPS28-204ENST00000526054 NUAK2Q9H093 628 aa8.78□□□□□ -1
VPS28-204ENST00000526054 RACGAP1Q9H0H5 632 aa8.78□□□□□ -1
VPS28-204ENST00000526054 RNF121Q9H920 327 aa8.78□□□□□ -1
VPS28-204ENST00000526054 SLC25A19Q9HC21 320 aa8.78□□□□□ -1
VPS28-204ENST00000526054 RPRD1BQ9NQG5 326 aaKnown RBP8.78□□□□□ -1
VPS28-204ENST00000526054 POLE4Q9NR33 117 aa8.78□□□□□ -1
VPS28-204ENST00000526054 B3GNT2Q9NY97 397 aa8.78□□□□□ -1
VPS28-204ENST00000526054 CDC42EP3Q9UKI2 254 aa8.78□□□□□ -1
VPS28-204ENST00000526054 ORC6Q9Y5N6 252 aa8.78□□□□□ -1
VPS28-204ENST00000526054 FKBP7Q9Y680 259 aa8.78□□□□□ -1
VPS28-204ENST00000526054 ATP23Q9Y6H3 246 aa8.78□□□□□ -1
VPS28-204ENST00000526054 IGHV1-18A0A0C4DH31 117 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 OR6C68A6NDL8 312 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 ZNF503-AS2A6NEH8 195 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 C12orf71A8MTZ7 269 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 CRYAAP02489 173 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 CST2P09228 141 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 CSF3P09919 207 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 FAM157CP0CG43 387 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 BMP4P12644 408 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 ZNF16P17020 682 aaPredicted RBP8.77□□□□□ -1.01
VPS28-204ENST00000526054 PAICSP22234 425 aaKnown RBP8.77□□□□□ -1.01
VPS28-204ENST00000526054 CRISP1P54107 249 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 PCBD1P61457 104 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 RAB1AP62820 205 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 HSF2Q03933 536 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 GLO1Q04760 184 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 PLP2Q04941 152 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 LOXL1Q08397 574 aaPredicted RBP8.77□□□□□ -1.01
VPS28-204ENST00000526054 GINS1Q14691 196 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 FAM27BQ5VT28 67 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 KDM4DQ6B0I6 523 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 CYB561A3Q8NBI2 242 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 SLC37A3Q8NCC5 494 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 NPEPL1Q8NDH3 523 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 IL17RDQ8NFM7 739 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 TMEM158Q8WZ71 300 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 PLEKHA8Q96JA3 519 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 VCX3BQ9H321 246 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 C1orf198Q9H425 327 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 FN3KQ9H479 309 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 NOX3Q9HBY0 568 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 SRA1Q9HD15 236 aaKnown RBP8.77□□□□□ -1.01
VPS28-204ENST00000526054 CMC2Q9NRP2 79 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 ZNF224Q9NZL3 707 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 B9D1Q9UPM9 204 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 COA3Q9Y2R0 106 aaPredicted RBP8.77□□□□□ -1.01
VPS28-204ENST00000526054 POLR1DQ9Y2S0 133 aa8.77□□□□□ -1.01
VPS28-204ENST00000526054 YLPM1P49750 1951 aaKnown RBP8.77□□□□□ -1.01
VPS28-204ENST00000526054 IGLV1-36A0A0B4J1U3 117 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 IQCMA0A1B0GVH7 501 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 ATP6V1G2-DDX39BF2Z307 99 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 PHF1O43189 567 aaPredicted RBP8.76□□□□□ -1.01
VPS28-204ENST00000526054 MITFO75030 526 aaPredicted RBP8.76□□□□□ -1.01
VPS28-204ENST00000526054 PTHP01270 115 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 CELA3BP08861 270 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 MMP7P09237 267 aaPredicted RBP8.76□□□□□ -1.01
VPS28-204ENST00000526054 PATE4P0C8F1 98 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 GAAP10253 952 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 ZNF14P17017 642 aaPredicted RBP8.76□□□□□ -1.01
VPS28-204ENST00000526054 EFNA4P52798 201 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 SLC25A1P53007 311 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 RAD23AP54725 363 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 LSM6P62312 80 aaKnown RBP8.76□□□□□ -1.01
VPS28-204ENST00000526054 CDK5Q00535 292 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 NAAAQ02083 359 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 SCRN3Q0VDG4 424 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 DAG1Q14118 895 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 CRMP1Q14194 572 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 RAB39AQ14964 217 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 TRIP10Q15642 601 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 SYT9Q86SS6 491 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 ZBTB46Q86UZ6 589 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 OR6V1Q8N148 313 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 PROKR2Q8NFJ6 384 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 C10orf105Q8TEF2 133 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 FOXN4Q96NZ1 517 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 TSSK2Q96PF2 358 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 CIB1Q99828 191 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 C9orf16Q9BUW7 83 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 ZNF416Q9BWM5 594 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 EMC7Q9NPA0 242 aa8.76□□□□□ -1.01
VPS28-204ENST00000526054 PRR23D1E9PI22 279 aaPredicted RBP8.75□□□□□ -1.01
VPS28-204ENST00000526054 DCTN6O00399 190 aa8.75□□□□□ -1.01
VPS28-204ENST00000526054 EI24O14681 340 aa8.75□□□□□ -1.01
VPS28-204ENST00000526054 CASQ2O14958 399 aaPredicted RBP8.75□□□□□ -1.01
VPS28-204ENST00000526054 SURF4O15260 269 aa8.75□□□□□ -1.01
VPS28-204ENST00000526054 LY6HO94772 140 aa8.75□□□□□ -1.01
VPS28-204ENST00000526054 HLA-DQA2P01906 255 aa8.75□□□□□ -1.01
VPS28-204ENST00000526054 SERPINA5P05154 406 aa8.75□□□□□ -1.01
VPS28-204ENST00000526054 PRR23D2P0DMB1 279 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms