RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	ZBTB8A	Q96BR9	441 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	PRRT1	Q99946	306 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	AKAP6	Q13023	2319 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	RALGAPA2	Q2PPJ7	1873 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	RNF212B	A8MTL3	300 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	SH2D1B	O14796	132 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	CSF1	P09603	554 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	MAP2K6	P52564	334 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	RPS23	P62266	143 aa	Known RBP	13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	NFATC3	Q12968	1075 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	OR8G2P	Q6IF36	304 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	PRSS45	Q7RTY3	260 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	ANKRD9	Q96BM1	317 aa	Predicted RBP	13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	ESRP2	Q9H6T0	727 aa	Known RBP	13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	FAM186A	A6NE01	2351 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	MEIKIN	A0A087WXM9	373 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144		M0QYG6	137 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	GABRA4	P48169	554 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	SPRED3	Q2MJR0	410 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	LILRA6	Q6PI73	481 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	IL34	Q6ZMJ4	242 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	SLC39A7	Q92504	469 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	RBMXL1	Q96E39	390 aa	Known RBP	13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	FAM173A	Q9BQD7	235 aa		13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	MRPS18B	Q9Y676	258 aa	Known RBP	13.09	□□□□□ -0.31
TRIO-222	ENST00000515144	OR6C6	A6NF89	314 aa		13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	BHLHE40	O14503	412 aa		13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	AGFG2	O95081	481 aa		13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	PDGFB	P01127	241 aa	Predicted RBP	13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	OR8U8	P0C7N1	319 aa		13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	SRM	P19623	302 aa		13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	LAP3	P28838	519 aa		13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	SOWAHC	Q53LP3	525 aa	Predicted RBP	13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	UBL7	Q96S82	380 aa	Predicted RBP	13.08	□□□□□ -0.31
TRIO-222	ENST00000515144	UPK1A	O00322	258 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	EIF4E2	O60573	245 aa	Known RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	T-ENOL	P0DO92	83 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	ANKRD53	Q8N9V6	530 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	SLC25A43	Q8WUT9	341 aa	Predicted RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	SLAMF6	Q96DU3	332 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	TNS1	Q9HBL0	1735 aa	Known RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	GLCE	O94923	617 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	ZNF14	P17017	642 aa	Predicted RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	CR2	P20023	1033 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	RAB11A	P62491	216 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	USF2	Q15853	346 aa	Predicted RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	ACKR1	Q16570	336 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	ZNF718	Q3SXZ3	478 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	GLIPR1L1	Q6UWM5	242 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	SEC22A	Q96IW7	307 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	C19orf53	Q9UNZ5	99 aa	Predicted RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	IGHV1OR21-1	A0A087WYE8	117 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	TRAV17	A0A0B4J275	112 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144		A0A1W2PRD5	423 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144		A0A1W2PRF3	423 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144		A0A1W2PRM7	423 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144		M0R135	149 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	CISD3	P0C7P0	127 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	MSMO1	Q15800	293 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	KMT5C	Q86Y97	462 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	APOBEC4	Q8WW27	367 aa	Known RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	RDH5	Q92781	318 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	ZNF799	Q96GE5	643 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	FYTTD1	Q96QD9	318 aa	Known RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	FBXO24	O75426	580 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	NPBWR1	P48145	328 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	GNG10	P50151	68 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	STPG1	Q5TH74	334 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	RPL22L1	Q6P5R6	122 aa	Known RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	LYRM1	O43325	122 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	EPHA8	P29322	1005 aa	Predicted RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	RETREG3	Q86VR2	466 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	OR2A1	Q8NGT9	310 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	SPACA9	Q96E40	222 aa	Predicted RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	DAZAP1	Q96EP5	407 aa	Known RBP	13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	KCNG2	Q9UJ96	466 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	ZNF391	Q9UJN7	358 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	PRELID3B	Q9Y3B1	194 aa		13.08	□□□□□ -0.32
TRIO-222	ENST00000515144	NRAS	P01111	189 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	SELE	P16581	610 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	MMP11	P24347	488 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	HACD4	Q5VWC8	232 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	DUSP22	Q9NRW4	184 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	RNF150	Q9ULK6	438 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	TIMM10B	Q9Y5J6	103 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	HTR1F	P30939	366 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	DRD3	P35462	400 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	BSG	P35613	385 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	PPIC	P45877	212 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	GALE	Q14376	348 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	RTP5	Q14D33	572 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	LYPD4	Q6UWN0	246 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	SLC22A24	Q8N4F4	322 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	GIMAP1	Q8WWP7	306 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	OXGR1	Q96P68	337 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	13.07	□□□□□ -0.32	3e-6	■■■■■ 38.5
TRIO-222	ENST00000515144	ZNF205	O95201	554 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	CDK4	P11802	303 aa		13.07	□□□□□ -0.32
TRIO-222	ENST00000515144	HAAO	P46952	286 aa		13.07	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms