RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ARL9Q6T311 187 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 B3GLCTQ6Y288 498 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 DTX2Q86UW9 622 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 C1orf174Q8IYL3 243 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 MUC15Q8N387 334 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 OR9Q1Q8NGQ5 310 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 OR2AJ1Q8NGZ0 328 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 AKR7LQ8NHP1 331 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 IPCEF1Q8WWN9 437 aaPredicted RBP12.34□□□□□ -0.43
NUP54-216ENST00000514901 IGFBPL1Q8WX77 278 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 OTULINQ96BN8 352 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 POM121L2Q96KW2 1035 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 GABARAPL3Q9BY60 117 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 CBLN4Q9NTU7 201 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 PLEK2Q9NYT0 353 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 TVP23BQ9NYZ1 205 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 EIF3KQ9UBQ5 218 aaKnown RBP12.34□□□□□ -0.43
NUP54-216ENST00000514901 CYB5R1Q9UHQ9 305 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 ATPIF1Q9UII2 106 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 FBXO9Q9UK97 447 aaPredicted RBP12.34□□□□□ -0.43
NUP54-216ENST00000514901 LAMP3Q9UQV4 416 aa12.34□□□□□ -0.43
NUP54-216ENST00000514901 ERICH4A6NGS2 130 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 ANKRD65E5RJM6 399 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 PRODHO43272 600 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 DOK2O60496 412 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 SMPD2O60906 423 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 GLCEO94923 617 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 GPANK1O95872 356 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 SERPINF1P36955 418 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 HIST1H3AP68431 136 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 SNTB2Q13425 540 aaKnown RBP12.33□□□□□ -0.44
NUP54-216ENST00000514901 MEP1BQ16820 701 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 SLC35D3Q5M8T2 416 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 HIST2H3PS2Q5TEC6 136 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 ZNF774Q6NX45 483 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 PLBD1Q6P4A8 553 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 ZBTB49Q6ZSB9 765 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 HIST2H3AQ71DI3 136 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 VASH1Q7L8A9 365 aaPredicted RBP12.33□□□□□ -0.44
NUP54-216ENST00000514901 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.33□□□□□ -0.44
NUP54-216ENST00000514901 CPOQ8IVL8 374 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 CBR4Q8N4T8 237 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 OR51L1Q8NGJ5 315 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 OR6K6Q8NGW6 343 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 EME1Q96AY2 570 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 FOXC2Q99958 501 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 BCL2L14Q9BZR8 327 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 C8orf4Q9NR00 106 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 MRPL22Q9NWU5 206 aaKnown RBP12.33□□□□□ -0.44
NUP54-216ENST00000514901 CMAHPQ9Y471 501 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 LHFPL6Q9Y693 200 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 CSMD2Q7Z408 3487 aa12.33□□□□□ -0.44
NUP54-216ENST00000514901 CSMD1Q96PZ7 3565 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 C5orf49A4QMS7 147 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 FAM183AA6NL82 134 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 B9A039 149 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 EI24O14681 340 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 RER1O15258 196 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 SYNGR3O43761 229 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 GYPBP06028 91 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 SOD3P08294 240 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 OR4A8P0C604 315 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 CLUP10909 449 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 PAX1P15863 534 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 CCNOP22674 350 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 GSTT1P30711 240 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 THBS4P35443 961 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 GGT2P36268 569 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 HTR5AP47898 357 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 ENTPD1P49961 510 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 UCP2P55851 309 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 ADAM8P78325 824 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 ECH1Q13011 328 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 RAB35Q15286 201 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 PCK2Q16822 640 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 CCDC92Q53HC0 331 aaPredicted RBP12.32□□□□□ -0.44
NUP54-216ENST00000514901 TEX30Q5JUR7 227 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 LINC01590Q5TEZ4 76 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 C12orf73Q69YU5 71 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 KRT80Q6KB66 452 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 SLC18B1Q6NT16 456 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 VHLLQ6RSH7 139 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 CXXC5Q7LFL8 322 aaKnown RBP12.32□□□□□ -0.44
NUP54-216ENST00000514901 LRRC75A-AS1Q8N1F1 130 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 OR1F12Q8NHA8 337 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 DCLRE1CQ96SD1 692 aaKnown RBP12.32□□□□□ -0.44
NUP54-216ENST00000514901 COQ7Q99807 217 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 TRAF4Q9BUZ4 470 aaPredicted RBP12.32□□□□□ -0.44
NUP54-216ENST00000514901 HDHD2Q9H0R4 259 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 OR51V1Q9H2C8 321 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 RIBC2Q9H4K1 309 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 MED20Q9H944 212 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 ELOVL3Q9HB03 270 aa12.32□□□□□ -0.44
NUP54-216ENST00000514901 HINT3Q9NQE9 182 aaKnown RBP12.32□□□□□ -0.44
NUP54-216ENST00000514901 AKAP9Q99996 3911 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 MAP1AP78559 2803 aaPredicted RBP12.31□□□□□ -0.44
NUP54-216ENST00000514901 LOC100509620A0A075B734 347 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 OR6C6A6NF89 314 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 TVP23AA6NH52 213 aa12.31□□□□□ -0.44
NUP54-216ENST00000514901 OVOL3O00110 214 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms