RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FOXQ1Q9C009 403 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 SLC5A6Q9Y289 635 aa11.53□□□□□ -0.56
USP53-209ENST00000514665 SULT1C2O00338 296 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 FFAR1O14842 300 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 CBX7O95931 251 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 CHRM2P08172 466 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 GIPP09681 153 aaPredicted RBP11.52□□□□□ -0.56
USP53-209ENST00000514665 ACHEP22303 614 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 DRD3P35462 400 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 CARD18P57730 90 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 RPL23AP62750 156 aaKnown RBP11.52□□□□□ -0.56
USP53-209ENST00000514665 OR52B4Q8NGK2 314 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 PELI1Q96FA3 418 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 BOKQ9UMX3 212 aaPredicted RBP11.52□□□□□ -0.56
USP53-209ENST00000514665 SIT1Q9Y3P8 196 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 PIGBOS1A0A0B4J2F0 54 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 QDPRP09417 244 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 ZNF728P0DKX0 622 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 EIF1P41567 113 aaKnown RBP11.52□□□□□ -0.56
USP53-209ENST00000514665 GPNMBQ14956 572 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 CNTNAP3Q9BZ76 1288 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 NELFAQ9H3P2 528 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 C1orf123Q9NWV4 160 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 TMEM184BQ9Y519 407 aaPredicted RBP11.52□□□□□ -0.56
USP53-209ENST00000514665 HRH3Q9Y5N1 445 aa11.52□□□□□ -0.56
USP53-209ENST00000514665 ABCA3Q99758 1704 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 A0A1W2PPC4 97 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 RPS10-NUDT3A0A1W2PQS6 291 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 PRSS37A4D1T9 235 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 MCRIP1C9JLW8 97 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 RPS10P46783 165 aaKnown RBP11.52□□□□□ -0.57
USP53-209ENST00000514665 GUCA2AQ02747 115 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 EIF4EBP2Q13542 120 aaPredicted RBP11.52□□□□□ -0.57
USP53-209ENST00000514665 EXOSC2Q13868 293 aaKnown RBP11.52□□□□□ -0.57
USP53-209ENST00000514665 RTL6Q6ICC9 239 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 VN1R4Q7Z5H5 301 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 FJX1Q86VR8 437 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 SMIM4Q8WVI0 70 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 LIPHQ8WWY8 451 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 C3orf49Q96BT1 292 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 ZNF681Q96N22 645 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 CHST11Q9NPF2 352 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 OBP2BQ9NPH6 170 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 SDHAF2Q9NX18 166 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 PADI1Q9ULC6 663 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 PIGLQ9Y2B2 252 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.52□□□□□ -0.57
USP53-209ENST00000514665 E9PI62 339 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 WISP3O95389 354 aaPredicted RBP11.52□□□□□ -0.57
USP53-209ENST00000514665 TCN2P20062 427 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 GCH1P30793 250 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 CD79BP40259 229 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 OR4D11Q8NGI4 311 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 SCARB1Q8WTV0 552 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 RNF141Q8WVD5 230 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 WDR34Q96EX3 536 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 ERVMER34-1Q9H9K5 563 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 TAS2R5Q9NYW4 299 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 EMC3Q9P0I2 261 aa11.52□□□□□ -0.57
USP53-209ENST00000514665 GPR171O14626 319 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 PHF1O43189 567 aaPredicted RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 RAB4BP61018 213 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 FAM53BQ14153 422 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 DOC2BQ14184 412 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 SLC17A1Q14916 467 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 EIF2S3LQ2VIR3 472 aaKnown RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 TMPRSS11FQ6ZWK6 438 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 CPEB2Q7Z5Q1 589 aaKnown RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 OR2L13Q8N349 312 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 TMEM217Q8N7C4 229 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 C17orf47Q8NEP4 570 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 OR1M1Q8NGA1 313 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 TCTEX1D2Q8WW35 142 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 FRZBQ92765 325 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 CCDC74AQ96AQ1 378 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 SGK3Q96BR1 496 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 SLC19A3Q9BZV2 496 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 LAT2Q9GZY6 243 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 GPR84Q9NQS5 396 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 NOSIPQ9Y314 301 aaKnown RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 AKAP6Q13023 2319 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 EIF1BO60739 113 aaKnown RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 LINC00303Q3SY05 128 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 TRIM61Q5EBN2 209 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 PGAP1Q75T13 922 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 YRDCQ86U90 279 aaKnown RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 TP53I13Q8NBR0 393 aaPredicted RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 TMED6Q8WW62 240 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 KTI12Q96EK9 354 aaPredicted RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 SSX3Q99909 188 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 ABHD6Q9BV23 337 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 FAM212BQ9NTI7 297 aaPredicted RBP11.51□□□□□ -0.57
USP53-209ENST00000514665 POMT2Q9UKY4 750 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 TP53TG5Q9Y2B4 290 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 COL24A1Q17RW2 1714 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 B8ZZF3 427 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 MSTNO14793 375 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 ACTL6BO94805 426 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 ATG12O94817 140 aa11.51□□□□□ -0.57
USP53-209ENST00000514665 ZFPL1O95159 310 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms