RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 FAM27BQ5VT28 67 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 REEP3Q6NUK4 255 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 ARL9Q6T311 187 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 ZNF841Q6ZN19 808 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 NANOGNBQ7Z5D8 188 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 PTOV1Q86YD1 416 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 ZNF420Q8TAQ5 688 aaPredicted RBP9.08□□□□□ -0.96
DDX41-216ENST00000513562 PPP1R14AQ96A00 147 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 MEGF10Q96KG7 1140 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 TBX15Q96SF7 602 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 ZNF426Q9BUY5 554 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 TRIM15Q9C019 465 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 PAIP1Q9H074 479 aaKnown RBP9.08□□□□□ -0.96
DDX41-216ENST00000513562 EVA1AQ9H8M9 152 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 TUBG2Q9NRH3 451 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 TBCCD1Q9NVR7 557 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 PNPOQ9NVS9 261 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 SLC13A4Q9UKG4 626 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 TIMM10BQ9Y5J6 103 aa9.08□□□□□ -0.96
DDX41-216ENST00000513562 TENM3Q9P273 2699 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 IGHV1-69DA0A0B4J2H0 117 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 A0A0U1RQK1 487 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 BLOC1S5-TXNDC5H3BN57 136 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 M0R3H8 397 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 KPNA4O00629 521 aaPredicted RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 BIRC5O15392 142 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 TOX4O94842 621 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 IGHV1-69P01742 117 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 THY1P04216 161 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 HIST1H2ABP04908 130 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 CST2P09228 141 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 IDO1P14902 403 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 FUT4P22083 530 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 LAP3P28838 519 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 EPHA3P29320 983 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 ERFP50548 548 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 FMODQ06828 376 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 EGR3Q06889 387 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 RPL18Q07020 188 aaKnown RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 SGCAQ16586 387 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 ZNF181Q2M3W8 571 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 ARMC4Q5T2S8 1044 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 DHRS7BQ6IAN0 325 aaPredicted RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 DCDC5Q6ZRR9 648 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 HIST3H2AQ7L7L0 130 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 C10orf111Q8N326 155 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 LRTOMTQ8WZ04 291 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 NSMAFQ92636 917 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 ANP32BQ92688 251 aaKnown RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 GTF2H4Q92759 462 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 HIST1H2ACQ93077 130 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 HAVCR1Q96D42 359 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 CMBLQ96DG6 245 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 MCHR1Q99705 422 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 DPAGT1Q9H3H5 408 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 WDR55Q9H6Y2 383 aaPredicted RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 NECAP2Q9NVZ3 263 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 AURKAIP1Q9NWT8 199 aaPredicted RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 ZIM2Q9NZV7 527 aa9.07□□□□□ -0.96
DDX41-216ENST00000513562 STX18Q9P2W9 335 aaKnown RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 NDRG4Q9ULP0 352 aaKnown RBP9.07□□□□□ -0.96
DDX41-216ENST00000513562 ZNF816-ZNF321PA0A0X1KG74 233 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 GMNCA6NCL1 334 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 GPR37O15354 613 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 F13BP05160 661 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 UMPSP11172 480 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 NR2C1P13056 603 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 PCBD1P61457 104 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 GUCY1A3Q02108 690 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 HERPUD1Q15011 391 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 NPTX1Q15818 432 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 RUNDC3AQ59EK9 446 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 FAM201AQ5SY85 155 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 TTC33Q6PID6 262 aaPredicted RBP9.06□□□□□ -0.96
DDX41-216ENST00000513562 SLC25A47Q6Q0C1 308 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 LYPD2Q6UXB3 125 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 FOXL2NBQ6ZUU3 175 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 ARMC8Q8IUR7 673 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 ATG16L2Q8NAA4 619 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 OR10AD1Q8NGE0 317 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 HDAC2Q92769 488 aaKnown RBP9.06□□□□□ -0.96
DDX41-216ENST00000513562 WDFY2Q96P53 400 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 SDR39U1Q9NRG7 319 aaPredicted RBP9.06□□□□□ -0.96
DDX41-216ENST00000513562 SLC25A37Q9NYZ2 338 aa9.06□□□□□ -0.96
DDX41-216ENST00000513562 NPIPB13A6NJU9 1138 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 LRRC30A6NM36 301 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 CPSF4LA6NMK7 179 aaKnown RBP9.05□□□□□ -0.96
DDX41-216ENST00000513562 NPIPB4C9JG80 1138 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 HDAC3O15379 428 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 SERPINB7O75635 380 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 LIPFP07098 398 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 COX5BP10606 129 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 BGNP21810 368 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 AQP1P29972 269 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 PSMB10P40306 273 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 SRP9P49458 86 aaKnown RBP9.05□□□□□ -0.96
DDX41-216ENST00000513562 NPY4RP50391 375 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 POLR2JP52435 117 aaKnown RBP9.05□□□□□ -0.96
DDX41-216ENST00000513562 CD47Q08722 323 aa9.05□□□□□ -0.96
DDX41-216ENST00000513562 SCARB2Q14108 478 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms