RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MYBPC1Q00872 1141 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TNFRSF9Q07011 255 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MFGE8Q08431 387 aaPredicted RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 MGAT3Q09327 533 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 BNIP2Q12982 314 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ILKQ13418 452 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 IL18R1Q13478 541 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 APOFQ13790 326 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TFDP2Q14188 446 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ZNF846Q147U1 533 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PDK3Q15120 406 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 IRF4Q15306 451 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TRIP13Q15645 432 aaPredicted RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 GRK1Q15835 563 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PSMD5Q16401 504 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PDK4Q16654 411 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 GUK1Q16774 197 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ZBED5Q49AG3 693 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 NADK2Q4G0N4 442 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 HIKESHIQ53FT3 197 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TEX44Q53QW1 395 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RNASE10Q5GAN6 216 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 UBE2UQ5VVX9 321 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MEDAGQ5VYS4 303 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CARD17Q5XLA6 110 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 OR6B2Q6IFH4 312 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SLC25A25Q6KCM7 469 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PRR5LQ6MZQ0 368 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 UGT2A3Q6UWM9 527 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CD300LGQ6UXG3 332 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 LRRN1Q6UXK5 716 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 FAM151BQ6UXP7 276 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CYHR1Q6ZMK1 362 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CENPUQ71F23 418 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SYVN1Q86TM6 617 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MRPL52Q86TS9 123 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 AMZ2Q86W34 360 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 STHQ8IWL8 128 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 KATNAL2Q8IYT4 538 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 OFCC1Q8IZS5 231 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 FAM58AQ8N1B3 248 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SVOPLQ8N434 492 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 C17orf78Q8N4C9 275 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MMGT1Q8N4V1 131 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PQLC3Q8N755 202 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 OR4K15Q8NH41 348 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 STOML3Q8TAV4 291 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ZNF596Q8TC21 504 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RLN3Q8WXF3 142 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 AP3S1Q92572 193 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 GTF2H4Q92759 462 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 HAS2Q92819 552 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RAB1CQ92928 201 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TMEM203Q969S6 136 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MCUR1Q96AQ8 359 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 KIAA1143Q96AT1 154 aaPredicted RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 HAVCR1Q96D42 359 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 L3HYPDHQ96EM0 354 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 EEF2KMTQ96G04 330 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 C5orf30Q96GV9 206 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 FAM210BQ96KR6 192 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CAPZA3Q96KX2 299 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SAMD8Q96LT4 415 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 RNF145Q96MT1 663 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PFDN5Q99471 154 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CHP1Q99653 195 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 NAPGQ99747 312 aaPredicted RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 EBNA1BP2Q99848 306 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 NICN1Q9BSH3 213 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TM6SF2Q9BZW4 377 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 NEUROG2Q9H2A3 272 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 VCX2Q9H322 139 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ASB7Q9H672 318 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ARMC7Q9H6L4 198 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 KIR3DX1Q9H7L2 352 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 AUNIPQ9H7T9 357 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 METTL7AQ9H8H3 244 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 Q9HAA7 133 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 ADGRL4Q9HBW9 690 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 TMBIM4Q9HC24 238 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CCNB1IP1Q9NPC3 277 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 NGBQ9NPG2 151 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 NIT2Q9NQR4 276 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 PNO1Q9NRX1 252 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 ZCCHC3Q9NUD5 404 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 ACOXLQ9NUZ1 547 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MED9Q9NWA0 146 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SMOXQ9NWM0 555 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MRPL22Q9NWU5 206 aaKnown RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 CD274Q9NZQ7 290 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 MIOXQ9UGB7 285 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 CHRNA9Q9UGM1 479 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 FBXW2Q9UKT8 454 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 DNPEPQ9ULA0 475 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 FOXA2Q9Y261 457 aaPredicted RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 GOLT1BQ9Y3E0 138 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 POLR3HQ9Y535 204 aaPredicted RBP1.43□□□□□ -2.18
NUP54-208ENST00000508604 OR1A2Q9Y585 309 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 HSPE1-MOB4S4R3N1 261 aa1.43□□□□□ -2.18
NUP54-208ENST00000508604 SPEF2Q9C093 1822 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms