RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SELENOVP59797 346 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 C11orf88Q6PI97 169 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 LRRC28Q86X40 367 aaPredicted RBP7.46□□□□□ -1.22
USP54-215ENST00000497106 LINC00346Q8IVM7 164 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 TIGD4Q8IY51 512 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 CNEP1R1Q8N9A8 125 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 POC5Q8NA72 575 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 DYNC2LI1Q8TCX1 351 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 RAB40AQ8WXH6 277 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 CMTM3Q96MX0 182 aa7.46□□□□□ -1.22
USP54-215ENST00000497106 LINC00854A0A1B0GVQ3 168 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 F5H5K5 113 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 XRCC2O43543 280 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 B3GALNT1O75752 331 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 PGA4P0DJD7 388 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 PGA3P0DJD8 388 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 GAAP10253 952 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 MST1P26927 711 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 RFC3P40938 356 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 PSMA6P60900 246 aaKnown RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 MRPS34P82930 218 aaKnown RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 DMKNQ6E0U4 476 aaPredicted RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 SLC25A47Q6Q0C1 308 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 SLC26A10Q8NG04 563 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 RPL3LQ92901 407 aaKnown RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 HCAR1Q9BXC0 346 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 ZNF552Q9H707 407 aaPredicted RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 MARCH7Q9H992 704 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 SLCO1C1Q9NYB5 712 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 ASH2LQ9UBL3 628 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 IGLV1-36A0A0B4J1U3 117 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 AHRRA9YTQ3 701 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 AQP7O14520 342 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 TRAF3IP2O43734 574 aaPredicted RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 NEURL1O76050 574 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 RCVRNP35243 200 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 CX3CR1P49238 355 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 SCAND1P57086 179 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 FXYD6P3P58550 94 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 HYAL4Q2M3T9 481 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 C10orf128Q5T292 105 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 C20orf196Q8IYI0 205 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 PELI1Q96FA3 418 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 TECTBQ96PL2 329 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 SORCS2Q96PQ0 1159 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 URM1Q9BTM9 101 aaKnown RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 LINC00470Q9BZP3 86 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 EMC7Q9NPA0 242 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 FOXJ3Q9UPW0 622 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 MSRB2Q9Y3D2 182 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 HRH3Q9Y5N1 445 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 ZNF354AO60765 605 aaPredicted RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 IL32P24001 234 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 NR4A2P43354 598 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 ART1P52961 327 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 NRN1LQ496H8 165 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 PYHIN1Q6K0P9 492 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 ZNF585AQ6P3V2 769 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 MRPL21Q7Z2W9 205 aaKnown RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 SERPINA12Q8IW75 414 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 SAMD12Q8N8I0 201 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 MDS2Q8NDY4 140 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 TMEM54Q969K7 222 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 SCMH1Q96GD3 660 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 TXNDC15Q96J42 360 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 SIGLEC12Q96PQ1 595 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 USB1Q9BQ65 265 aaKnown RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 RTN4RQ9BZR6 473 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 ELL3Q9HB65 397 aaPredicted RBP7.45□□□□□ -1.22
USP54-215ENST00000497106 ABCB9Q9NP78 766 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 EML5Q05BV3 1969 aa7.45□□□□□ -1.22
USP54-215ENST00000497106 LRRC3CA6NJW4 275 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 PSMD9O00233 223 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 WDR1O75083 606 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 KDM4BO94953 1096 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ECDO95905 644 aaPredicted RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 UBBP0CG47 229 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 CALCBP10092 127 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 PTGS2P35354 604 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 MAP2K3P46734 347 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 PLAURQ03405 335 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 DOC2BQ14184 412 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ODF4Q2M2E3 257 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ZNF468Q5VIY5 522 aaPredicted RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 TMEM211Q6ICI0 200 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FIP1L1Q6UN15 594 aaKnown RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 DRAM2Q6UX65 266 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 SLC16A12Q6ZSM3 486 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FAM57BQ71RH2 274 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 LRRC18Q8N456 261 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FDCSPQ8NFU4 85 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 C4orf45Q96LM5 186 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FOXN4Q96NZ1 517 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 OR2M2Q96R28 347 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ISG20L2Q9H9L3 353 aaKnown RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 NGBQ9NPG2 151 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 CCDC88CQ9P219 2028 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 SLC2A2P11168 524 aaPredicted RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 SELEP16581 610 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms