RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 HIST1H1CP16403 213 aaKnown RBP9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MGMTP16455 207 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 EIF2S3P41091 472 aaKnown RBP9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GPR143P51810 404 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RSU1Q15404 277 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SGCAQ16586 387 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR7E24Q6IFN5 339 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NHLRC1Q6VVB1 395 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF687Q8N1G0 1237 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR5M9Q8NGP3 310 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR52N1Q8NH53 320 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ADAT1Q9BUB4 502 aaKnown RBP9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MENTQ9BUN1 341 aa9.76□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IGHV1OR21-1A0A087WYE8 117 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PPP1R2P9O14990 202 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SUSD5O60279 629 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SCGB1D2O95969 90 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CSF1P09603 554 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 HOXB1P14653 301 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MAPK3P27361 379 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PTGFRP43088 359 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 POU3F1Q03052 451 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CDNFQ49AH0 187 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PLA1AQ53H76 456 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 EEF1A1P5Q5VTE0 462 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF322Q6U7Q0 402 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ATRAIDQ6UW56 229 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TSEN54Q7Z6J9 526 aaKnown RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LINC00346Q8IVM7 164 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR2AK2Q8NG84 335 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TMED6Q8WW62 240 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 HGDQ93099 445 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF681Q96N22 645 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ARRDC1-AS1Q9H2J1 176 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TMEM184BQ9Y519 407 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 C4orf47A7E2U8 309 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF208O43345 1280 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 HLA-AP01891 365 aaKnown RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACTBP60709 375 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ACTG1P63261 375 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RNASE10Q5GAN6 216 aaKnown RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PRAMEF8Q5VWM4 474 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PRAMEF7Q5VXH5 474 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF584Q8IVC4 421 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FOXRED1Q96CU9 486 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 HCAR1Q9BXC0 346 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GHRLQ9UBU3 117 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SUSD2Q9UGT4 822 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 A0A1W2PNR3 127 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SDHAP31040 664 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CD80P33681 288 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RAG2P55895 527 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PSG6Q00889 435 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TOMM34Q15785 309 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PRICKLE4Q2TBC4 344 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ARHGAP11BQ3KRB8 267 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 UBE2NLQ5JXB2 153 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MRM1Q6IN84 353 aaKnown RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RGS7BPQ6MZT1 257 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RPL13AP3Q6NVV1 102 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 Q6ZTK2 550 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LCORQ96JN0 433 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PHB2Q99623 299 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NUDT9Q9BW91 350 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PAPOLGQ9BWT3 736 aaKnown RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 LYRM4Q9HD34 91 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 MEPEQ9NQ76 525 aaPredicted RBP9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DUSP22Q9NRW4 184 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 V9GY05 133 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 FRMPD3Q5JV73 1810 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TRANK1O15050 2925 aa9.75□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SMCO3A2RU48 225 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CDHR4A6H8M9 788 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SYT5O00445 386 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ADAM11O75078 769 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NSA2O95478 260 aaKnown RBP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 SLC2A1P11166 492 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NME2P22392 152 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DNASE1L1P49184 302 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RPS18P62269 152 aaKnown RBP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 EEF1A1P68104 462 aaKnown RBP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TLE3Q04726 772 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NR0B2Q15466 257 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF620Q6ZNG0 422 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 GLB1L2Q8IW92 636 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 RNF32Q9H0A6 362 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TMPRSS5Q9H3S3 457 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TAS2R5Q9NYW4 299 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 COL4A4P53420 1690 aaPredicted RBP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 ZNF318Q5VUA4 2279 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TMEM82A0PJX8 343 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 TMEM218A2RU14 115 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 DCDC2BA2VCK2 349 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 OR6C68A6NDL8 312 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 NPIPB8E9PQR5 432 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 EIF3GO75821 320 aaKnown RBP eCLIP9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 IGHV3-9P01782 118 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 CCL4P13236 92 aa9.74□□□□□ -0.85
MSH5-SAPCD1-207ENST00000493662 PGAM2P15259 253 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms