RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 AQP6Q13520 282 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 CRMP1Q14194 572 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 KPNB1Q14974 876 aaKnown RBP12.72□□□□□ -0.37
USP4-212ENST00000486549 RAB35Q15286 201 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 MSMPQ1L6U9 139 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 KRTAP21-3Q3LHN1 58 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 SYT9Q86SS6 491 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 ZBTB46Q86UZ6 589 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 OR51L1Q8NGJ5 315 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 PYDC1Q8WXC3 89 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 NRBF2Q96F24 287 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 DUS3LQ96G46 650 aaKnown RBP12.72□□□□□ -0.37
USP4-212ENST00000486549 POM121L2Q96KW2 1035 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 SYT3Q9BQG1 590 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 MRPL37Q9BZE1 423 aaKnown RBP12.72□□□□□ -0.37
USP4-212ENST00000486549 SEMA6AQ9H2E6 1030 aa12.72□□□□□ -0.37
USP4-212ENST00000486549 H7C417 338 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 SGCEO43556 437 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 GYPBP06028 91 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 OSMP13725 252 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 ZNF23P17027 643 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 ZNF3P17036 446 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 GRK5P34947 590 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 HTR5AP47898 357 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 NUDT6P53370 316 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 ACTR3P61158 418 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 TEKQ02763 1124 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 GINS1Q14691 196 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 EFNB3Q15768 340 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 ZNF362Q5T0B9 420 aaPredicted RBP12.71□□□□□ -0.37
USP4-212ENST00000486549 RGS7BPQ6MZT1 257 aaPredicted RBP12.71□□□□□ -0.37
USP4-212ENST00000486549 SLC27A4Q6P1M0 643 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 LINC00346Q8IVM7 164 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 SLC26A10Q8NG04 563 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 OR2T4Q8NH00 348 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 MRPL24Q96A35 216 aaKnown RBP12.71□□□□□ -0.37
USP4-212ENST00000486549 OTULINQ96BN8 352 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 DDOQ99489 341 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 VRK1Q99986 396 aaPredicted RBP12.71□□□□□ -0.37
USP4-212ENST00000486549 WACQ9BTA9 647 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 BARX1Q9HBU1 254 aaPredicted RBP12.71□□□□□ -0.37
USP4-212ENST00000486549 DYNLRB1Q9NP97 96 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 PAPOLBQ9NRJ5 636 aaKnown RBP12.71□□□□□ -0.37
USP4-212ENST00000486549 PLEK2Q9NYT0 353 aa12.71□□□□□ -0.37
USP4-212ENST00000486549 TRIM64A6NGJ6 449 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 TVP23AA6NH52 213 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 TRIM64BA6NI03 449 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 G3V2T6 193 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 RER1O15258 196 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 SSX4O60224 188 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 TFP02787 698 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 WNT5AP41221 380 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 RAD52P43351 418 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 DAPP51397 102 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 UCP2P55851 309 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 KCNMB1Q16558 191 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 CLEC12BQ2HXU8 276 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 SPATA46Q5T0L3 261 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 ACSM5Q6NUN0 579 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 CORO6Q6QEF8 472 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 LYPD4Q6UWN0 246 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 VASH1Q7L8A9 365 aaPredicted RBP12.7□□□□□ -0.38
USP4-212ENST00000486549 LRP11Q86VZ4 500 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 HIPK1Q86Z02 1210 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 OR1J1Q8NGS3 322 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 ABHD4Q8TB40 342 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 ZNRF4Q8WWF5 429 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 RBM4Q9BWF3 364 aaKnown RBP12.7□□□□□ -0.38
USP4-212ENST00000486549 BCL2L14Q9BZR8 327 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 MED20Q9H944 212 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 CMC2Q9NRP2 79 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 EIF3KQ9UBQ5 218 aaKnown RBP12.7□□□□□ -0.38
USP4-212ENST00000486549 DUSP13Q9UII6 198 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 NDRG4Q9ULP0 352 aaKnown RBP12.7□□□□□ -0.38
USP4-212ENST00000486549 LHFPL6Q9Y693 200 aa12.7□□□□□ -0.38
USP4-212ENST00000486549 SETD2Q9BYW2 2564 aaPredicted RBP12.7□□□□□ -0.38
USP4-212ENST00000486549 ACANP16112 2415 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 A0A1W2PPW3 197 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 TMEM129A0AVI4 362 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 FAM183AA6NL82 134 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 LY6HO94772 140 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 CLUP10909 449 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 ZNF823P16415 610 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 SPI1P17947 270 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 PCSK6P29122 969 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 CCDC92Q53HC0 331 aaPredicted RBP12.69□□□□□ -0.38
USP4-212ENST00000486549 TMEM236Q5W0B7 351 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 FAHD1Q6P587 224 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 TMEM154Q6P9G4 183 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 ZDHHC13Q8IUH4 622 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 ZNF101Q8IZC7 436 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 OR6K6Q8NGW6 343 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 SLC7A6Q92536 515 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 SORCS2Q96PQ0 1159 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 RAB3IPQ96QF0 476 aaPredicted RBP12.69□□□□□ -0.38
USP4-212ENST00000486549 DOK1Q99704 481 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 CDADC1Q9BWV3 514 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 KRT84Q9NSB2 600 aa12.69□□□□□ -0.38
USP4-212ENST00000486549 MRPL22Q9NWU5 206 aaKnown RBP12.69□□□□□ -0.38
USP4-212ENST00000486549 MYEF2Q9P2K5 600 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms