RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 TUBA1BP68363 451 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TUBA4AP68366 448 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 NAAAQ02083 359 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 RIPK1Q13546 671 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 KEAP1Q14145 624 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 RAB39AQ14964 217 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 ETFDHQ16134 617 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 ZNF672Q499Z4 452 aaPredicted RBP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 PABPC1L2AQ5JQF8 200 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TEX30Q5JUR7 227 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 ZNF362Q5T0B9 420 aaPredicted RBP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 AGAP6Q5VW22 663 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 NXNL2Q5VZ03 156 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TMEM236Q5W0B7 351 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 C12orf73Q69YU5 71 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 ZNF544Q6NX49 715 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TUBA1AQ71U36 451 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 RHOUQ7L0Q8 258 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 WDFY1Q8IWB7 410 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 GALNT4Q8N4A0 578 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 DHRSXQ8N5I4 330 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 ZNF611Q8N823 705 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TCEANCQ8N8B7 351 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 SETD9Q8NE22 299 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 SLC26A10Q8NG04 563 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 OR9Q1Q8NGQ5 310 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 AKAP1Q92667 903 aaKnown RBP eCLIP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 PTP4A1Q93096 173 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 PIGTQ969N2 578 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 MRPL48Q96GC5 212 aaKnown RBP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 HRASLS5Q96KN8 279 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TSSK2Q96PF2 358 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 INTS14Q96SY0 518 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 DDOQ99489 341 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 PITX2Q99697 317 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 DHRS9Q9BPW9 319 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TMEM204Q9BSN7 226 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 NMNAT2Q9BZQ4 307 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 BCL2L14Q9BZR8 327 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 OR2H1Q9GZK4 316 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 HDHD2Q9H0R4 259 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 TOR3AQ9H497 397 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 CXorf56Q9H5V9 222 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 UBTD1Q9HAC8 227 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 CLN6Q9NWW5 311 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 PLEK2Q9NYT0 353 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 CISD1Q9NZ45 108 aaKnown RBP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 ASH2LQ9UBL3 628 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 WARS2Q9UGM6 360 aaKnown RBP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.19□□□□□ -1.26
SF3A1-208ENST00000485618 PCDHGB1Q9Y5G3 927 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 ROS1P08922 2347 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 CCDC168Q8NDH2 2452 aa7.19□□□□□ -1.26
SF3A1-208ENST00000485618 CADP27708 2225 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 MED13LQ71F56 2210 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 IGKV1D-43A0A0B4J1Z2 117 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 LOC100130705A0A1B0GUX0 176 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 C5orf49A4QMS7 147 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 FAM183AA6NL82 134 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 FAM171A2A8MVW0 826 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 H0YJX3 145 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 J3QW42 95 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 PHYHO14832 338 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 CASQ2O14958 399 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 SLC16A6O15403 523 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 DOK2O60496 412 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 MPZL1O95297 269 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 SNAP29O95721 258 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 MMP7P09237 267 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 SPARCP09486 303 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 PATE4P0C8F1 98 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 GAAP10253 952 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 ZNF14P17017 642 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 ZNF32P17041 273 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 CCNOP22674 350 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 NR4A1P22736 598 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 APOBEC3AP31941 199 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 GGT2P36268 569 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 HTR5AP47898 357 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 HSPA13P48723 471 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 PSG4Q00888 419 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 IL18R1Q13478 541 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 RAB35Q15286 201 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 LRRC36Q1X8D7 754 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 ZIK1Q3SY52 487 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 ELFN2Q5R3F8 820 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 SLC25A30Q5SVS4 291 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 SLC18B1Q6NT16 456 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 KCTD18Q6PI47 426 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 C22orf34Q6ZV56 151 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 MEPCEQ7L2J0 689 aaKnown RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 LSRQ86X29 649 aaPredicted RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 ERI1Q8IV48 349 aaKnown RBP7.18□□□□□ -1.26
SF3A1-208ENST00000485618 NUP37Q8NFH4 326 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 OR51L1Q8NGJ5 315 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 OR1F12Q8NHA8 337 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 FAM81AQ8TBF8 368 aa7.18□□□□□ -1.26
SF3A1-208ENST00000485618 TMEM171Q8WVE6 324 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms