RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PRPSAP1Q14558 356 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 RNF212Q495C1 297 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 HSP90AA4PQ58FG1 418 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 FBXL22Q6P050 247 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 LYPD2Q6UXB3 125 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF493Q6ZR52 646 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 LINC01555Q8NAE3 123 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 GATSQ8NAP1 163 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 ACTRT1Q8TDG2 376 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 CA5BP1Q8WTZ4 195 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 PIH1D2Q8WWB5 315 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 WFIKKN1Q96NZ8 548 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 FOXC2Q99958 501 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 SLCO1B3Q9NPD5 702 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 PCYOX1Q9UHG3 505 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 ZNF225Q9UK10 706 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 TP53TG3Q9ULZ0 132 aa3.53□□□□□ -1.84
UPF3B-203ENST00000478840 MRPS18BQ9Y676 258 aaKnown RBP3.53□□□□□ -1.84
UPF3B-203ENST00000478840 NFASCO94856 1347 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 IGLV1-36A0A0B4J1U3 117 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 PLAC8L1A1L4L8 177 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 SLC22A20A6NK97 555 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 NCBP2LA6PVI3 153 aaKnown RBP3.52□□□□□ -1.85
UPF3B-203ENST00000478840 HSBP1O75506 76 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 ACTL6AO96019 429 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 IGLV2-23P01705 113 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 RETP07949 1114 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 KRT16P08779 473 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 GNAO1P09471 354 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 TPM1P09493 284 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 RHOXF2BP0C7M4 288 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 OR5H8P0DN80 308 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 RCC1P18754 421 aaPredicted RBP3.52□□□□□ -1.85
UPF3B-203ENST00000478840 RAB3BP20337 219 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 LCN2P80188 198 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 CDH17Q12864 832 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 PSG7Q13046 419 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 STK38Q15208 465 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF79Q15937 498 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 TPTE2P1Q5T6R2 138 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 ASCL4Q6XD76 172 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 LINC00336Q6ZUF6 198 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 MBOAT2Q6ZWT7 520 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 STRADAQ7RTN6 431 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 OAFQ86UD1 273 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 NPWQ8N729 165 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 CCDC54Q8NEL0 328 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 ITFG1Q8TB96 612 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 TMEM230Q96A57 120 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 APH1AQ96BI3 265 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 DNAJC19Q96DA6 116 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 LRRC39Q96DD0 335 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 PHYHIPLQ96FC7 376 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 GALNT14Q96FL9 552 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 MICU1Q9BPX6 476 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 RHOXF2Q9BQY4 288 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 GAL3ST2Q9H3Q3 398 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 PATZ1Q9HBE1 687 aaKnown RBP3.52□□□□□ -1.85
UPF3B-203ENST00000478840 MRM3Q9HC36 420 aaKnown RBP3.52□□□□□ -1.85
UPF3B-203ENST00000478840 ABCB10Q9NRK6 738 aa3.52□□□□□ -1.85
UPF3B-203ENST00000478840 BZW2Q9Y6E2 419 aaKnown RBP3.52□□□□□ -1.85
UPF3B-203ENST00000478840 GAKO14976 1311 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 GSTTP1A0A1W2PQM5 241 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 KMOO15229 486 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 PSMD4P55036 377 aaKnown RBP3.51□□□□□ -1.85
UPF3B-203ENST00000478840 WNT4P56705 351 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 ZNF121P58317 390 aaPredicted RBP3.51□□□□□ -1.85
UPF3B-203ENST00000478840 SLC7A9P82251 487 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 NDPQ00604 133 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 HMGCS1Q01581 520 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 SMARCB1Q12824 385 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 PSG5Q15238 335 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 QPRTQ15274 297 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 ZSCAN26Q16670 478 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 FBXO48Q5FWF7 155 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 THEM4Q5T1C6 240 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 KRTAP5-11Q6L8G4 156 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 WDR82Q6UXN9 313 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 FAM58AQ8N1B3 248 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 CSGALNACT2Q8N6G5 542 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 TMEM104Q8NE00 496 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 FBXO36Q8NEA4 188 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 OR52E2Q8NGJ4 325 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 OR51L1Q8NGJ5 315 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 OR8K3Q8NH51 312 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 OR51F2Q8NH61 342 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 ISOC2Q96AB3 205 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 RPEQ96AT9 228 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 CREB3L1Q96BA8 519 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 SIKE1Q9BRV8 207 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 CALN1Q9BXU9 219 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 PARP12Q9H0J9 701 aaKnown RBP3.51□□□□□ -1.85
UPF3B-203ENST00000478840 STMN4Q9H169 189 aaPredicted RBP3.51□□□□□ -1.85
UPF3B-203ENST00000478840 HAUS4Q9H6D7 363 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 NANOGQ9H9S0 305 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 DMAP1Q9NPF5 467 aaPredicted RBP3.51□□□□□ -1.85
UPF3B-203ENST00000478840 DENND4AQ7Z401 1863 aa3.51□□□□□ -1.85
UPF3B-203ENST00000478840 LTBP1Q14766 1721 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 MEGF6O75095 1541 aa3.5□□□□□ -1.85
UPF3B-203ENST00000478840 CAMTA1Q9Y6Y1 1673 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms