RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 TIMM10BQ9Y5J6 103 aa5.97□□□□□ -1.45
BRCA1-215ENST00000478531 CHD3Q12873 2000 aaKnown RBP5.96□□□□□ -1.45
BRCA1-215ENST00000478531 M0R129 80 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 SGCEO43556 437 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 PTHP01270 115 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 CD8AP01732 235 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 OR4A8P0C604 315 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 ZNF35P13682 527 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 SPI1P17947 270 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 PAICSP22234 425 aaKnown RBP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 NR4A1P22736 598 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 APOBEC3AP31941 199 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 THBS4P35443 961 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 RPS27P42677 84 aaKnown RBP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 HTR5AP47898 357 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 CRISP1P54107 249 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 TEKQ02763 1124 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 SCRN3Q0VDG4 424 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 ADIPOQQ15848 244 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 ZNF362Q5T0B9 420 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 AGAP6Q5VW22 663 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 ZNF544Q6NX49 715 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 TMEM154Q6P9G4 183 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 ZBTB46Q86UZ6 589 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 C10orf67Q8IYJ2 551 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 ALDH16A1Q8IZ83 802 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 NUP37Q8NFH4 326 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 SLC26A10Q8NG04 563 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 OR2T4Q8NH00 348 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 SVIPQ8NHG7 77 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 CIB1Q99828 191 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 TRAF4Q9BUZ4 470 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 RBM4Q9BWF3 364 aaKnown RBP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 CDADC1Q9BWV3 514 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 HCAR1Q9BXC0 346 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 CACNG6Q9BXT2 260 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 TEX12Q9BXU0 123 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 GABARAPL1Q9H0R8 117 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 RIBC2Q9H4K1 309 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 S100A14Q9HCY8 104 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 BEX4Q9NWD9 120 aaPredicted RBP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 PLEK2Q9NYT0 353 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 SPEF1Q9Y4P9 236 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 FKBP7Q9Y680 259 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 NIPBLQ6KC79 2804 aaeCLIP5.96□□□□□ -1.46
BRCA1-215ENST00000478531 MED13LQ71F56 2210 aa5.96□□□□□ -1.46
BRCA1-215ENST00000478531 LOC100509620A0A075B734 347 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 PRR23D1E9PI22 279 aaPredicted RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 EI24O14681 340 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 RER1O15258 196 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SURF4O15260 269 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 BAG2O95816 211 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 TFP02787 698 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 LCKP06239 509 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 PRR23D2P0DMB1 279 aaPredicted RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 ZNF823P16415 610 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 EPHA2P29317 976 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SERPINF1P36955 418 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 PTH2RP49190 550 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 GDI2P50395 445 aaKnown RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 ATP5J2P56134 94 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 ERVS71-1P61550 626 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 RPS23P62266 143 aaKnown RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 LSM6P62312 80 aaKnown RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 ADAM8P78325 824 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SPATA46Q5T0L3 261 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 KDM4DQ6B0I6 523 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 PLBD1Q6P4A8 553 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 VASH1Q7L8A9 365 aaPredicted RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 DTX2Q86UW9 622 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 PARP8Q8N3A8 854 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 OR1J2Q8NGS2 313 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 ZNRF4Q8WWF5 429 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SLC7A6Q92536 515 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 MBD6Q96DN6 1003 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 FOXC2Q99958 501 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SYT3Q9BQG1 590 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 OR51V1Q9H2C8 321 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 CBLN4Q9NTU7 201 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 MRPL22Q9NWU5 206 aaKnown RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 TVP23BQ9NYZ1 205 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 LHFPL6Q9Y693 200 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 COMMD3-BMI1R4GMX3 469 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SETD2Q9BYW2 2564 aaPredicted RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SNAP29O95721 258 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 ABHD16AO95870 558 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 HMGN1P05114 100 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SPARCP09486 303 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 FMO3P31513 532 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SLC25A1P53007 311 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 RPS7P62081 194 aaKnown RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SNRPD2P62316 118 aaKnown RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 ESRRGP62508 458 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 NKX6-1P78426 367 aaPredicted RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 CDK5Q00535 292 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 PTGES3Q15185 160 aaKnown RBP5.95□□□□□ -1.46
BRCA1-215ENST00000478531 RAB35Q15286 201 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 SNAPC1Q16533 368 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 KCNMB1Q16558 191 aa5.95□□□□□ -1.46
BRCA1-215ENST00000478531 KLHL12Q53G59 568 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms