RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TXNIPQ9H3M7 391 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 SMURF2Q9HAU4 748 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 CCNB1IP1Q9NPC3 277 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 TMEM160Q9NX00 188 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 CDC42EP3Q9UKI2 254 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 ADAM21Q9UKJ8 722 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 OAZ3Q9UMX2 235 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 A4GNTQ9UNA3 340 aa5.84□□□□□ -1.47
CCDC88A-213ENST00000476903 IGHV4-61A0A0C4DH41 118 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 IQCMA0A1B0GVH7 501 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 A0A1W2PPW3 197 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 A6NIZ1 184 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 J3KTA2 159 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 NME4O00746 187 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 SLC2A10O95528 541 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 STAMBPO95630 424 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 SERPINA1P01009 418 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 IGHMP01871 453 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 APEHP13798 732 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF23P17027 643 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 MAKP20794 623 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 GIFP27352 417 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 YAP1P46937 504 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 GSK3BP49841 420 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 SELENOVP59797 346 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RAP1BP61224 184 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RPL27P61353 136 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RAP1AP62834 184 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 MRPS34P82930 218 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 HSF2Q03933 536 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 PRKCDQ05655 676 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 CD47Q08722 323 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 TOP3AQ13472 1001 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ANKDD1AQ495B1 522 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 C10orf128Q5T292 105 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM166AQ6J272 317 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RGS7BPQ6MZT1 257 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 PODNL1Q6PEZ8 512 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF730Q6ZMV8 503 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RRM2BQ7LG56 351 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 OAFQ86UD1 273 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 CYP4Z1Q86W10 505 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 NRMQ8IXM6 262 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RNF113BQ8IZP6 322 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ZCCHC24Q8N2G6 241 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF786Q8N393 782 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 LRRC18Q8N456 261 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 FNDC8Q8TC99 324 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ACOT11Q8WXI4 607 aaPredicted RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 NSMAFQ92636 917 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 HDAC2Q92769 488 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM162AQ96A26 154 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ELAC2Q9BQ52 826 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ALG12Q9BV10 488 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 NDEL1Q9GZM8 345 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 NSRP1Q9H0G5 558 aaKnown RBP5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 TPK1Q9H3S4 243 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 MS4A5Q9H3V2 200 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 SIAEQ9HAT2 523 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 CDH20Q9HBT6 801 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 SPAG4Q9NPE6 437 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 MAN2C1Q9NTJ4 1040 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RHCGQ9UBD6 479 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ABCD2Q9UBJ2 740 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 LPAR3Q9UBY5 353 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF69Q9UC07 566 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 RPS6KA6Q9UK32 745 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 FZR1Q9UM11 496 aa5.83□□□□□ -1.48
CCDC88A-213ENST00000476903 TRAV27A0A087WT01 109 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 EFCAB9A8MZ26 197 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 FFAR1O14842 300 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 LMX1BO60663 402 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 GMNNO75496 209 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 SNAP29O95721 258 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 IGFBP1P08833 259 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 MMP7P09237 267 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 FAM157CP0CG43 387 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 CCL2P13500 99 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 PRDX6P30041 224 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 CDAP32320 146 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 APLNRP35414 380 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 ECI1P42126 302 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 GUCA1AP43080 201 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 RAD52P43351 418 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 ALDH3B1P43353 468 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 SLC9A3P48764 834 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 CHN2P52757 468 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 KLF3P57682 345 aaPredicted RBP5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 CTXN1P60606 82 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 PSME3P61289 254 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 FMODQ06828 376 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 THEM4Q5T1C6 240 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 UNQ6126/PRO20091Q6UXV3 157 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 MBOAT2Q6ZWT7 520 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 IGFN1Q86VF2 1251 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 LRRC75AQ8NAA5 344 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 OR13C2Q8NGS9 318 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 OR51A7Q8NH64 312 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 ZNF519Q8TB69 540 aa5.82□□□□□ -1.48
CCDC88A-213ENST00000476903 C11orf40Q8WZ69 217 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms