RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 LIAT1Q6ZQX7 453 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 RNF165Q6ZSG1 346 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 H1FNTQ75WM6 255 aaPredicted RBP3.8□□□□□ -1.8
USP4-209ENST00000475873 SLC16A14Q7RTX9 510 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 OR2W3Q7Z3T1 314 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 TRIM46Q7Z4K8 759 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 FAM90A1Q86YD7 464 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 UEVLDQ8IX04 471 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 CADM2Q8N3J6 435 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 LRRC18Q8N456 261 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 OR2T11Q8NH01 316 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 Q8TCH9 128 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 SFXN5Q8TD22 340 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 STK35Q8TDR2 534 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 NABP1Q96AH0 204 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 ROPN1LQ96C74 230 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 CMBLQ96DG6 245 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 SLC41A3Q96GZ6 507 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 RAX2Q96IS3 184 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 CCT7Q99832 543 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 PRSS22Q9GZN4 317 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 WNT5BQ9H1J7 359 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 SLC38A1Q9H2H9 487 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 OR51I1Q9H343 314 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 RMND5AQ9H871 391 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 RETNQ9HD89 108 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 MAN2C1Q9NTJ4 1040 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 MRGBPQ9NV56 204 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 GLTPQ9NZD2 209 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 ERVK-18Q9QC07 812 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 ZMAT5Q9UDW3 170 aaKnown RBP3.8□□□□□ -1.8
USP4-209ENST00000475873 GUCA1BQ9UMX6 200 aa3.8□□□□□ -1.8
USP4-209ENST00000475873 FLG2Q5D862 2391 aaPredicted RBP3.8□□□□□ -1.8
USP4-209ENST00000475873 A0A087WUJ7 227 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 IGKV1D-43A0A0B4J1Z2 117 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 LINC00854A0A1B0GVQ3 168 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ELOVL7A1L3X0 281 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 SH2D7A6NKC9 451 aaPredicted RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 FAM25EA8MYX2 175 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 G3V2L1 256 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 LGALS8O00214 317 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 AIM2O14862 343 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 LDLRAD4O15165 306 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 SURF4O15260 269 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 AKAP8O43823 692 aaKnown RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 MTRF1O75570 445 aaKnown RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 SLC22A3O75751 556 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 SERPINI2O75830 405 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 SEC31AO94979 1220 aaKnown RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 LY86O95711 162 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 AK1P00568 194 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 PTHP01270 115 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 GYPAP02724 150 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 HLA-DPB1P04440 258 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 GUSBP08236 651 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 KRT16P08779 473 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 FSTP19883 344 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 AMY2BP19961 511 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 MATN1P21941 496 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 CNTFRP26992 372 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 CDAP32320 146 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 MYCNOSP40205 109 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 MAGEA12P43365 314 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 CEBPDP49716 269 aaPredicted RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 RGS6P49758 472 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ANXA11P50995 505 aaKnown RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 BIDP55957 195 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ARL4CP56559 192 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 PRSS12P56730 875 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 RPL23AP62750 156 aaKnown RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 HOXC5Q00444 222 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 SLC7A5Q01650 507 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 HSF2Q03933 536 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 PLP2Q04941 152 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ILF2Q12905 390 aaKnown RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 MRPL28Q13084 256 aaKnown RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 PPP1R7Q15435 360 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 MAPK11Q15759 364 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 GSTA3Q16772 222 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 DEFB136Q30KP8 78 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 SLC36A2Q495M3 483 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 SPDYE7PQ495Y7 208 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 RFTN2Q52LD8 501 aaPredicted RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 ZNF678Q5SXM1 525 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 C9orf66Q5T8R8 295 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 PRAMEF6Q5VXH4 476 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 LIPMQ5VYY2 423 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 TNFAIP8L2Q6P589 184 aaPredicted RBP3.79□□□□□ -1.8
USP4-209ENST00000475873 C16orf62Q7Z3J2 963 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 C6orf120Q7Z4R8 191 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 CCDC91Q7Z6B0 441 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 LHFPL4Q7Z7J7 247 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 CTAGE3PQ8IX95 158 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 GOLGA6L1Q8N7Z2 621 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ANKFN1Q8N957 763 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ATG16L2Q8NAA4 619 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 ADPRHL1Q8NDY3 354 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 HIPK4Q8NE63 616 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 MIPOL1Q8TD10 442 aa3.79□□□□□ -1.8
USP4-209ENST00000475873 OIT3Q8WWZ8 545 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms