RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MUC4Q99102 2169 aa6.49□□□□□ -1.37
USP54-211ENST00000474929 TRAV36DV7A0A075B6V5 113 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 RNF103-CHMP3A0A140T963 221 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 GMNCA6NCL1 334 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 VGLL3A8MV65 326 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 LGALS8O00214 317 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 RNASET2O00584 256 aaKnown RBP6.48□□□□□ -1.37
USP54-211ENST00000474929 TP73O15350 636 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 GLCEO94923 617 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 ABHD16AO95870 558 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 MMP7P09237 267 aaPredicted RBP6.48□□□□□ -1.37
USP54-211ENST00000474929 NR2C1P13056 603 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 GRPRP30550 384 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 ACAA2P42765 397 aaKnown RBP6.48□□□□□ -1.37
USP54-211ENST00000474929 BMXP51813 675 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 IL5RAQ01344 420 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 HNRNPA0Q13151 305 aaKnown RBP6.48□□□□□ -1.37
USP54-211ENST00000474929 SELPLGQ14242 412 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 KIAA0040Q15053 153 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 LIN52Q52LA3 116 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 GPAT3Q53EU6 434 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 RABL3Q5HYI8 236 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 MRPL2Q5T653 305 aaKnown RBP6.48□□□□□ -1.37
USP54-211ENST00000474929 ETV3LQ6ZN32 361 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 HDDC2Q7Z4H3 204 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 SLC22A9Q8IVM8 553 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 PEX5LQ8IYB4 626 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 OR52H1Q8NGJ2 320 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 OR5M8Q8NGP6 311 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 OR6X1Q8NH79 312 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 OR5AK3PQ8NH89 298 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 RPS4Y2Q8TD47 263 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 TMEM54Q969K7 222 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 SLC41A3Q96GZ6 507 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 C4orf45Q96LM5 186 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 CCDC115Q96NT0 180 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 SPATA25Q9BR10 227 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 OR51I1Q9H343 314 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 ABCB10Q9NRK6 738 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 TMCC3Q9ULS5 477 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 UTP11Q9Y3A2 253 aaKnown RBP6.48□□□□□ -1.37
USP54-211ENST00000474929 NOP16Q9Y3C1 178 aaKnown RBP6.48□□□□□ -1.37
USP54-211ENST00000474929 TIMM22Q9Y584 194 aa6.48□□□□□ -1.37
USP54-211ENST00000474929 A0A087WUJ7 227 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 EXOC1LA0A1B0GW35 172 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 CLDN24A6NM45 220 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 M0R1W7 72 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 LY86O95711 162 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 C6orf47O95873 294 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 FRMD6-AS1P0C7T7 363 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 EFNA1P20827 205 aaPredicted RBP6.47□□□□□ -1.37
USP54-211ENST00000474929 AZGP1P25311 298 aaKnown RBP6.47□□□□□ -1.37
USP54-211ENST00000474929 MAGEA4P43358 317 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 INSL3P51460 131 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 RPS26P62854 115 aaKnown RBP6.47□□□□□ -1.37
USP54-211ENST00000474929 CKAP4Q07065 602 aaKnown RBP6.47□□□□□ -1.37
USP54-211ENST00000474929 RUNDC3AQ59EK9 446 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 C6orf120Q7Z4R8 191 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 KRT77Q7Z794 578 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 OR7A2PQ8NGA2 310 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 OR10AD1Q8NGE0 317 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 OR5D13Q8NGL4 314 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 XAGE5Q8WWM1 108 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 ST8SIA4Q92187 359 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 HAVCR1Q96D42 359 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 SLC25A44Q96H78 314 aaPredicted RBP6.47□□□□□ -1.37
USP54-211ENST00000474929 AKR1E2Q96JD6 320 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 SIAEQ9HAT2 523 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 SMURF1Q9HCE7 757 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 KAAG1Q9UBP8 84 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 RPS6KB2Q9UBS0 482 aa6.47□□□□□ -1.37
USP54-211ENST00000474929 LOC100509620A0A075B734 347 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 A0A1W2PRD5 423 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 A0A1W2PRF3 423 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 A0A1W2PRM7 423 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 CDHR4A6H8M9 788 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 CENPBD1B2RD01 187 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 MS4A18H0YCH9 400 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 DVL1O14640 695 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 LYPLA1O75608 230 aaPredicted RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 IGHG1P01857 330 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 GSTA1P08263 222 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 RAC2P15153 192 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 IMPDH1P20839 514 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 RPS4Y1P22090 263 aaKnown RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 GSK3BP49841 420 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 FOXA1P55317 472 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 BIDP55957 195 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 PCBD1P61457 104 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 RPL38P63173 70 aaKnown RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 NPTX1Q15818 432 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 WHAMMP3Q1A5X7 153 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 UNC50Q53HI1 259 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 FAM27D1Q5T7N8 215 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 RNF220Q5VTB9 566 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 C8orf74Q6P047 294 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 ZNF836Q6ZNA1 936 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 RNF165Q6ZSG1 346 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 LY6G5BQ8NDX9 201 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 SLC26A10Q8NG04 563 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms