RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TUBA1BP68363 451 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 TUBA4AP68366 448 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 PSG4Q00888 419 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 RAB40BQ12829 278 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 DAZAP2Q15038 168 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-205ENST00000466897 B3GLCTQ6Y288 498 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 TUBA1AQ71U36 451 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 CDC20BQ86Y33 519 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 ALDH16A1Q8IZ83 802 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 IL17RDQ8NFM7 739 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 OR6N2Q8NGY6 317 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 OR2AJ1Q8NGZ0 328 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 OTOSQ8NHW6 89 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 CNIH3Q8TBE1 160 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 ST7LQ8TDW4 575 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 HDHD2Q9H0R4 259 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 RNF121Q9H920 327 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 NOX3Q9HBY0 568 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 PLCXD1Q9NUJ7 323 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 NPAP1Q9NZP6 1156 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 CRIM1Q9NZV1 1036 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 GDF2Q9UK05 429 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-205ENST00000466897 PCDHGB1Q9Y5G3 927 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 TMEM14AQ9Y6G1 99 aa13.22□□□□□ -0.29
NPHP4-205ENST00000466897 USP9YO00507 2555 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-205ENST00000466897 IRGMA1A4Y4 181 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 J3QRE1 110 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PHYHO14832 338 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 CASKO14936 926 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 SGCEO43556 437 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 SELENOFO60613 162 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 SPARCP09486 303 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 OR2T7P0C7T2 308 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PATE4P0C8F1 98 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PSKH1P11801 424 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PTAFRP25105 342 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 SLC15A1P46059 708 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 NR1H2P55055 460 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PLP2Q04941 152 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PIGFQ07326 219 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 RAB35Q15286 201 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 BEX5Q5H9J7 111 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PABPC1L2AQ5JQF8 200 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 LAIR2Q6ISS4 152 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 TMEM108Q6UXF1 575 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 VASH1Q7L8A9 365 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-205ENST00000466897 DPY19L4Q7Z388 723 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 WFDC8Q8IUA0 241 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 ZNF584Q8IVC4 421 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 OR2T27Q8NH04 317 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 IPCEF1Q8WWN9 437 aaPredicted RBP13.21□□□□□ -0.29
NPHP4-205ENST00000466897 WNT5BQ9H1J7 359 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PNRC2Q9NPJ4 139 aaKnown RBP13.21□□□□□ -0.29
NPHP4-205ENST00000466897 DDX28Q9NUL7 540 aaKnown RBP13.21□□□□□ -0.29
NPHP4-205ENST00000466897 PLEK2Q9NYT0 353 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 AASSQ9UDR5 926 aa13.21□□□□□ -0.29
NPHP4-205ENST00000466897 EXOGQ9Y2C4 368 aaKnown RBP13.21□□□□□ -0.29
NPHP4-205ENST00000466897 SPTAN1Q13813 2472 aaKnown RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 IGHV1-18A0A0C4DH31 117 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 IQCMA0A1B0GVH7 501 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 A1L4Q6 167 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 OR6C6A6NF89 314 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 RER1O15258 196 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 SYNGR3O43761 229 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 DOK2O60496 412 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 PIPP12273 146 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ALOX5APP20292 161 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 NAA10P41227 235 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 NUDT6P53370 316 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ACTC1P68032 377 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ACTA1P68133 377 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ECH1Q13011 328 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 SNTB1Q13884 538 aaKnown RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 SMN1Q16637 294 aaKnown RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 KLHL22Q53GT1 634 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 CCDC92Q53HC0 331 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ELFN2Q5R3F8 820 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 CORO6Q6QEF8 472 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 CFAP77Q6ZQR2 320 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 DCXRQ7Z4W1 244 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 LINC00346Q8IVM7 164 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 OR51G2Q8NGK0 314 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 RNF133Q8WVZ7 376 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ASB17Q8WXJ9 295 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 RNFT2Q96EX2 444 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ZC3HAV1LQ96H79 300 aaKnown RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 MAP6Q96JE9 813 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 COQ7Q99807 217 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 JAM3Q9BX67 310 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 ESRP2Q9H6T0 727 aaKnown RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 CNOT2Q9NZN8 540 aaKnown RBP13.2□□□□□ -0.3
NPHP4-205ENST00000466897 LRRC42Q9Y546 428 aa13.2□□□□□ -0.3
NPHP4-205ENST00000466897 DEFB108AA8MXU0 73 aa13.19□□□□□ -0.3
NPHP4-205ENST00000466897 ZNF878C9JN71 531 aa13.19□□□□□ -0.3
NPHP4-205ENST00000466897 ICMTO60725 284 aa13.19□□□□□ -0.3
NPHP4-205ENST00000466897 FADS2O95864 444 aaKnown RBP13.19□□□□□ -0.3
NPHP4-205ENST00000466897 LYNP07948 512 aa13.19□□□□□ -0.3
NPHP4-205ENST00000466897 MRPL3P09001 348 aaKnown RBP13.19□□□□□ -0.3
NPHP4-205ENST00000466897 CCDC159P0C7I6 412 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms