RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 TFP02787 698 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 CLUP10909 449 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 ZNF35P13682 527 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 CCNOP22674 350 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 NR4A1P22736 598 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 GSTT1P30711 240 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 APOBEC3AP31941 199 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-204ENST00000463487 RAD52P43351 418 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 ENTPD1P49961 510 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 SNTB2Q13425 540 aaKnown RBP17.14■□□□□ 0.33
COL9A3-204ENST00000463487 RAB35Q15286 201 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 ZNF774Q6NX45 483 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 C1orf174Q8IYL3 243 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 IPCEF1Q8WWN9 437 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-204ENST00000463487 NRGNQ92686 78 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 NEUROG1Q92886 237 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 PTP4A1Q93096 173 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 RDH12Q96NR8 316 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 INTS14Q96SY0 518 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 BCL2L14Q9BZR8 327 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 CXorf56Q9H5V9 222 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 MED20Q9H944 212 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 PLEKHA6Q9Y2H5 1048 aa17.14■□□□□ 0.33
COL9A3-204ENST00000463487 ABCA12Q86UK0 2595 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 DCHS2Q6V1P9 2916 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 C5orf49A4QMS7 147 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 OR6C6A6NF89 314 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 TLX2O43763 284 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-204ENST00000463487 SPARCP09486 303 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 PCSK6P29122 969 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 ECH1Q13011 328 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 ELFN2Q5R3F8 820 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 KRT80Q6KB66 452 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 VASH1Q7L8A9 365 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-204ENST00000463487 GID4Q8IVV7 300 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 MUC15Q8N387 334 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 PACRGLQ8N7B6 248 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 TCEANCQ8N8B7 351 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 CPEB3Q8NE35 698 aaKnown RBP17.13■□□□□ 0.33
COL9A3-204ENST00000463487 TMEM163Q8TC26 289 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 PITX2Q99697 317 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 HCAR1Q9BXC0 346 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 ELOVL3Q9HB03 270 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 MRPL22Q9NWU5 206 aaKnown RBP17.13■□□□□ 0.33
COL9A3-204ENST00000463487 CYB5R1Q9UHQ9 305 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 FBXO9Q9UK97 447 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-204ENST00000463487 LHFPL6Q9Y693 200 aa17.13■□□□□ 0.33
COL9A3-204ENST00000463487 TVP23AA6NH52 213 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 RER1O15258 196 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 PRKYO43930 277 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 EPHA2P29317 976 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 TTKP33981 857 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 GGT2P36268 569 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 HGFACQ04756 655 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 ZIK1Q3SY52 487 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-204ENST00000463487 TEX30Q5JUR7 227 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 SLC18B1Q6NT16 456 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 VHLLQ6RSH7 139 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 B3GLCTQ6Y288 498 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 SHFQ7M4L6 423 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 ERI1Q8IV48 349 aaKnown RBP17.12■□□□□ 0.33
COL9A3-204ENST00000463487 LINC00346Q8IVM7 164 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 ZNF511Q8NB15 262 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 ZNF555Q8NEP9 628 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 OR8J1Q8NGP2 316 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 OR6N2Q8NGY6 317 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 OR1F12Q8NHA8 337 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 TRUB1Q8WWH5 349 aaKnown RBP17.12■□□□□ 0.33
COL9A3-204ENST00000463487 HRASLS5Q96KN8 279 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 POM121L2Q96KW2 1035 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 COQ7Q99807 217 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 GRIP2Q9C0E4 1043 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 LIME1Q9H400 295 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 TOR3AQ9H497 397 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 CBLN4Q9NTU7 201 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 BEX4Q9NWD9 120 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-204ENST00000463487 GDF2Q9UK05 429 aaPredicted RBP17.12■□□□□ 0.33
COL9A3-204ENST00000463487 LAMP3Q9UQV4 416 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 CMAHPQ9Y471 501 aa17.12■□□□□ 0.33
COL9A3-204ENST00000463487 SETXQ7Z333 2677 aaKnown RBP17.12■□□□□ 0.33
COL9A3-204ENST00000463487 SLC22A31A6NKX4 558 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 ZNF593O00488 134 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-204ENST00000463487 ATE1O95260 518 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 CCL2P13500 99 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 CD53P19397 219 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 GLRXP35754 106 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 POLR2IP36954 125 aaKnown RBP17.11■□□□□ 0.33
COL9A3-204ENST00000463487 SELENOVP59797 346 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 HIST1H3AP68431 136 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 NKX6-1P78426 367 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-204ENST00000463487 APOFQ13790 326 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 LRRC36Q1X8D7 754 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 HIST2H3PS2Q5TEC6 136 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 LINC01590Q5TEZ4 76 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 NXNL2Q5VZ03 156 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 OTPQ5XKR4 325 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 CORO6Q6QEF8 472 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 HIST2H3AQ71DI3 136 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 FAM81AQ8TBF8 368 aa17.11■□□□□ 0.33
COL9A3-204ENST00000463487 MBD6Q96DN6 1003 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms